View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20744_low_12 (Length: 316)
Name: NF20744_low_12
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20744_low_12 |
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| [»] scaffold0188 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 37341508 - 37341357
Alignment:
| Q |
1 |
atttgcaggctattttgacaagttgtaaaagtcttatatgtgatagagtttgaattttaatgttgtttgaactgccatgttgcagttttgaaaacttggg |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37341508 |
atttgcaagctattttgacaagttgtaaaagtcttatatgtgatagagtttgaattttaatgttgtttgaactgccatgttgcagttttgaagacttggg |
37341409 |
T |
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| Q |
101 |
gcctatattgaaaattcaaatgctttatcttgatgtttcgatttggaaccaa |
152 |
Q |
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| T |
37341408 |
gcctatattgaaaattcaaatgctttatcttgatgtttcgatttggaaccaa |
37341357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 25889945 - 25889794
Alignment:
| Q |
1 |
atttgcaggctattttgacaagttgtaaaagtcttatatgtgatagagtttgaattttaatgttgtttgaactgccatgttgcagttttgaaaacttggg |
100 |
Q |
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| T |
25889945 |
atttgcaagctattttgacaagttgtaaaagtcttatatgtgatagagtttgaattttaatgttgtttgaactgccatgttgcagttttgaagacttggg |
25889846 |
T |
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| Q |
101 |
gcctatattgaaaattcaaatgctttatcttgatgtttcgatttggaaccaa |
152 |
Q |
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| T |
25889845 |
gcctatattgaaaattcaaatgctttatcttgatgtttcgatttggaaccaa |
25889794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 38953402 - 38953347
Alignment:
| Q |
33 |
cttatatgtgatagagtttgaattttaatgttgtttgaactgccatgttgcagttt |
88 |
Q |
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| T |
38953402 |
cttatgtgtaatatagtttaaattttaatgttgtctgaactgccatgttgcagttt |
38953347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 29539 - 29418
Alignment:
| Q |
33 |
cttatatgtgatagagtttgaattttaatgttgtttgaactgccatgttgcagttttgaaaacttgg-ggcctatatt-gaaaattcaaatgctttatct |
130 |
Q |
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| T |
29539 |
cttatgtgtgatatagtttgaattttaatgttgtgtgaaatgccatgttgctgttttgaagacttggaggcctatattagaaatttcaaatgc-atatct |
29441 |
T |
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| Q |
131 |
tgatgtttcgatttggaaccaag |
153 |
Q |
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| T |
29440 |
gaatgttttgatttggaaccaag |
29418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 29403 - 29334
Alignment:
| Q |
182 |
ctctacttgagtatatgttaactcctttgcaatagttacgtatcaacctgtcattttaaatagttcctctg |
252 |
Q |
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| T |
29403 |
ctctacttgagtataagttaactcctttggaatagttatgta-cagcctatcattttaattaggtcctctg |
29334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 29156330 - 29156451
Alignment:
| Q |
33 |
cttatatgtgatagagtttgaattttaatgttgtttgaactgccatgttgcagttttgaaaacttgg-ggcctatatt-gaaaattcaaatgctttatct |
130 |
Q |
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| T |
29156330 |
cttatgtgtgatatagtttgaattttaatgttgtgtgaaatgccatgttgctgttttgaagacttggaggcctatattagaaatttcaaatgc-atatct |
29156428 |
T |
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| Q |
131 |
tgatgtttcgatttggaaccaag |
153 |
Q |
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| T |
29156429 |
gaatgttttgatttggaaccaag |
29156451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 29156466 - 29156535
Alignment:
| Q |
182 |
ctctacttgagtatatgttaactcctttgcaatagttacgtatcaacctgtcattttaaatagttcctctg |
252 |
Q |
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||||||||||||||| |||| |||||||| |||||||| ||| || ||| ||||||||| ||| ||||||| |
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| T |
29156466 |
ctctacttgagtataagttagctcctttggaatagttatgta-cagcctatcattttaattaggtcctctg |
29156535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 22966521 - 22966576
Alignment:
| Q |
33 |
cttatatgtgatagagtttgaattttaatgttgtttgaactgccatgttgcagttt |
88 |
Q |
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| T |
22966521 |
cttatgtgtaatatagtttaaattttaatgttgtctgaactgccatgttgcagttt |
22966576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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