View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20744_low_15 (Length: 240)
Name: NF20744_low_15
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20744_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 35247563 - 35247767
Alignment:
| Q |
18 |
taaagaatagaaacttacttgcatggtgttgaatagaatatttatcccgaattatttgaggggtattgtccattgtagcaccaacttttggggcctgaaa |
117 |
Q |
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| T |
35247563 |
taaagaatagaaacttacttgcatggtgttgaatagaatatttatcccgaattatttgaggggtattgtccattgtagcaccaacttttggggcctgaaa |
35247662 |
T |
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| Q |
118 |
attaagtaatatatgagtgtgttgcgctatgaatgaaaccaagaaccattgattaacattgaacatttagccattatatataacctgactctcactggaa |
217 |
Q |
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| T |
35247663 |
attaagtaatatatgagtgtgttgcgctatgaatgaaaccaagaaccattgattaacattgaacatttagccattatatataacctgactctcactggaa |
35247762 |
T |
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| Q |
218 |
gttcc |
222 |
Q |
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||||| |
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| T |
35247763 |
gttcc |
35247767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 35241927 - 35242132
Alignment:
| Q |
19 |
aaagaatagaaacttacttgcatggtgttgaatagaatatttatcccgaattatttgaggggtattgtccattgtagcaccaacttttggggcctgaaaa |
118 |
Q |
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| T |
35241927 |
aaagaatagaaatttacttataaagtgttgaatagaatatccatcccgaatcatttgaggggtattgtccattatagcaccaatgtttggggcctgaaaa |
35242026 |
T |
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| Q |
119 |
ttaagtaatatatgagtgtgttgcgctatgaatgaaaccaagaaccattgattaacattgaacatttagccattatatataacctgactctcactggaag |
218 |
Q |
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| T |
35242027 |
ttgagtaatatatgactgcgttgcactatatatgaaactaagaaccagttattaacattgaacatttagccatcatatataacctgactctgaccggaag |
35242126 |
T |
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| Q |
219 |
ttcctg |
224 |
Q |
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||||| |
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| T |
35242127 |
gtcctg |
35242132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 35272067 - 35272275
Alignment:
| Q |
21 |
agaatagaaacttacttgcatggtgttgaatagaatatttatcccgaattatttgaggggtattgtccattgtagcaccaacttttggggcctgaaaatt |
120 |
Q |
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|||| ||||| ||||| || |||||||||||| |||| |||| ||||||||||||||||||| |||||| ||| |||||| ||| ||||||||||||| |
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| T |
35272067 |
agaaaagaaatttactctcaaggtgttgaatagcatatccatccggaattatttgaggggtattttccattataggaccaacgttttgggcctgaaaatt |
35272166 |
T |
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| Q |
121 |
aagtaat----atatgagtgtgttgcgctatgaatgaaaccaagaaccattgattaacattgaacatttagccattatatataacctgactctcactgga |
216 |
Q |
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|||||| |||||| |||||||| |||| |||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
35272167 |
gagtaattaatatatgactgtgttgcactatatatgaaaccaagaaccagttattaacattgaacatttagccatcatatataacctgactctgactgga |
35272266 |
T |
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| Q |
217 |
agttcctga |
225 |
Q |
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| T |
35272267 |
agttcctga |
35272275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 35284274 - 35284359
Alignment:
| Q |
48 |
gaatagaatatttatcccgaattatttgaggggtattgtccattgtagcaccaacttttggggcctgaaaattaagtaatatatga |
133 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |
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| T |
35284274 |
gaatagaatatccatcccgaattatttgataggtattgtccattatagcaccaatgtttggggcctgaaaattgagtaatatatga |
35284359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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