View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20744_low_18 (Length: 233)

Name: NF20744_low_18
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20744_low_18
NF20744_low_18
[»] chr1 (1 HSPs)
chr1 (18-215)||(33647986-33648197)
[»] chr3 (8 HSPs)
chr3 (14-215)||(25812783-25812998)
chr3 (16-108)||(25818453-25818545)
chr3 (19-98)||(25821817-25821896)
chr3 (141-214)||(25816165-25816238)
chr3 (122-215)||(25818573-25818666)
chr3 (31-104)||(31810821-31810894)
chr3 (160-210)||(25821974-25822024)
chr3 (19-88)||(25816029-25816098)
[»] chr5 (2 HSPs)
chr5 (19-104)||(30122415-30122500)
chr5 (19-101)||(35643815-35643897)
[»] chr2 (1 HSPs)
chr2 (29-86)||(38748173-38748230)


Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 33647986 - 33648197
Alignment:
Q  18 caaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggatgaaaccagatgcacg 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33647986 caaaggggatgcttctgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggatgaaactagatgcacg 33648085  T
Q  118 aga--------------cgctcacaagccagtggagtttcgaccgttgtatgcttctaccggttctgctctaccttcacctacatcgtattcaaattcac 203  Q
    |||              |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33648086 agaagggtttgctttttcgctcacaagccagaggagcttcgaccgttgtatgcttctaccggttctgctctaccttcacctacatcatattcaaattcac 33648185  T
Q  204 caagtgcttctt 215  Q
    | ||||||||||    
T  33648186 ctagtgcttctt 33648197  T

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Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 25812783 - 25812998
Alignment:
Q  14 gtagcaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggatgaaaccagatg 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||    
T  25812783 gtagaaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatccagctcaatatataacaaggctttgcaaggatgaaaccagatg 25812882  T
Q  114 cacgaga--------------cgctcacaagccagtggagtttcgaccgttgtatgcttctaccggttctgctctaccttcacctacatcgtattcaaat 199  Q
    ||| |||               |||||||| |||| |||| |||||||||| |||||||||||||||| | || | |||||||||||||| |||||||||    
T  25812883 caccagaagggtttgcttttttgctcacaaaccagaggagcttcgaccgttatatgcttctaccggttgtcctttgccttcacctacatcatattcaaat 25812982  T
Q  200 tcaccaagtgcttctt 215  Q
    |||||  |||||||||    
T  25812983 tcaccttgtgcttctt 25812998  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 25818453 - 25818545
Alignment:
Q  16 agcaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggatgaaacc 108  Q
    |||||||||||||||||||||||||||||||||||||  || |||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  25818453 agcaaaggggatgcttgtgaatatgcacatggtatttgcgagtgctggcttcatcctggtcaatatagaacaaggcattgcaaggatgaaacc 25818545  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 25821817 - 25821896
Alignment:
Q  19 aaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaa 98  Q
    ||||||||| | ||| |||||||||||||| ||||||| | |||||| ||||||| || ||||||||||| |||||||||    
T  25821817 aaaggggatacatgtcaatatgcacatggtgtttttgagtcctggctgcatcctggtcgatacagaacaacgctttgcaa 25821896  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 25816165 - 25816238
Alignment:
Q  141 ttcgaccgttgtatgcttctaccggttctgctctaccttcacctacatcgtattcaaattcaccaagtgcttct 214  Q
    |||| |||||| ||||| ||||| |||||||| | ||| |||||||||  ||||||||||||||||||||||||    
T  25816165 ttcgcccgttgaatgctactaccagttctgctttgcctccacctacattttattcaaattcaccaagtgcttct 25816238  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 25818573 - 25818666
Alignment:
Q  122 gctcacaagccagtggagtttcgaccgttgtatgcttctaccggttctgctctaccttcacctacatcgtattcaaattcaccaagtgcttctt 215  Q
    |||||||| || | |||| |||||||  |||||| || ||| ||||||||| | |||||||||||||| ||||| |||||||| ||| ||||||    
T  25818573 gctcacaaacccgaggagcttcgaccactgtatgattttacgggttctgcttttccttcacctacatcatattccaattcacctagttcttctt 25818666  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 31810821 - 31810894
Alignment:
Q  31 tgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggatga 104  Q
    ||||| ||| |||||||||||||||| |  | |||||||||| | |||||||||||||||||||| || |||||    
T  31810821 tgtgagtattcacatggtatttttgagtctttgcttcatccttcacaatacagaacaaggctttgtaaagatga 31810894  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 25821974 - 25822024
Alignment:
Q  160 taccggttctgctctaccttcacctacatcgtattcaaattcaccaagtgc 210  Q
    |||| |||||||| | ||||||||||||||  |||||||||||||||||||    
T  25821974 taccagttctgctttgccttcacctacatcaaattcaaattcaccaagtgc 25822024  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 25816029 - 25816098
Alignment:
Q  19 aaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaa 88  Q
    ||||||||||| ||||||||||||||||||  |||||| | | |||| ||||||  || |||||||||||    
T  25816029 aaaggggatgcatgtgaatatgcacatggtgcttttgagtccgggctgcatcctagtcgatacagaacaa 25816098  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 30122415 - 30122500
Alignment:
Q  19 aaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggatga 104  Q
    ||||| ||| ||||||| |||||||| ||||||||||| ||||||||||||||||| || || |  ||| ||||||||||||||||    
T  30122415 aaaggagattcttgtgactatgcacacggtatttttgagtgctggcttcatcctgcgcagtataagacacggctttgcaaggatga 30122500  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 35643815 - 35643897
Alignment:
Q  19 aaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaagga 101  Q
    ||||||||| ||||||| |||||||||||| |||| || |  ||||| ||||| || |||||| |||||||||||||||||||    
T  35643815 aaaggggattcttgtgagtatgcacatggtgttttcgagtcatggctacatcccgcacaataccgaacaaggctttgcaagga 35643897  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 38748230 - 38748173
Alignment:
Q  29 cttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaac 86  Q
    |||||||||  || |||||  ||||||||||||||||||||||||||  |||||||||    
T  38748230 cttgtgaattcgctcatggcgtttttgaatgctggcttcatcctgctagatacagaac 38748173  T

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