View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20744_low_2 (Length: 635)

Name: NF20744_low_2
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20744_low_2
NF20744_low_2
[»] chr4 (21 HSPs)
chr4 (18-624)||(7969908-7970518)
chr4 (54-118)||(44719398-44719462)
chr4 (54-118)||(47372832-47372896)
chr4 (58-118)||(37042701-37042761)
chr4 (54-117)||(7681948-7682011)
chr4 (53-118)||(8598978-8599043)
chr4 (54-118)||(29209212-29209276)
chr4 (54-118)||(41192242-41192306)
chr4 (54-121)||(38903752-38903819)
chr4 (54-121)||(42639054-42639121)
chr4 (54-146)||(2557680-2557773)
chr4 (69-120)||(20105553-20105604)
chr4 (54-117)||(25575005-25575068)
chr4 (54-121)||(54470388-54470455)
chr4 (54-116)||(31403073-31403135)
chr4 (54-116)||(32339740-32339802)
chr4 (56-118)||(40018226-40018288)
chr4 (54-108)||(55029002-55029056)
chr4 (80-117)||(48174131-48174168)
chr4 (54-121)||(44047404-44047472)
chr4 (54-114)||(55388252-55388312)
[»] chr6 (9 HSPs)
chr6 (54-118)||(32945429-32945493)
chr6 (54-116)||(1747984-1748046)
chr6 (54-118)||(6293429-6293493)
chr6 (54-117)||(34543-34606)
chr6 (54-97)||(35199681-35199723)
chr6 (65-118)||(413275-413328)
chr6 (54-117)||(3210546-3210609)
chr6 (54-118)||(5053707-5053771)
chr6 (65-117)||(7267423-7267475)
[»] chr3 (12 HSPs)
chr3 (54-113)||(55244459-55244518)
chr3 (53-128)||(41842550-41842625)
chr3 (54-118)||(42026573-42026637)
chr3 (54-121)||(11284169-11284236)
chr3 (54-116)||(46140588-46140650)
chr3 (54-122)||(41971303-41971371)
chr3 (54-117)||(29601073-29601136)
chr3 (54-117)||(49841797-49841860)
chr3 (78-115)||(39535440-39535477)
chr3 (23-55)||(36515012-36515044)
chr3 (78-118)||(46367424-46367464)
chr3 (58-118)||(50237671-50237731)
[»] chr7 (10 HSPs)
chr7 (57-116)||(6807388-6807447)
chr7 (54-118)||(22174181-22174245)
chr7 (80-146)||(21078124-21078190)
chr7 (55-121)||(3629557-3629623)
chr7 (79-116)||(39812144-39812181)
chr7 (53-117)||(9210742-9210806)
chr7 (54-118)||(12966197-12966261)
chr7 (53-121)||(14057658-14057726)
chr7 (53-121)||(14367686-14367754)
chr7 (60-116)||(36245295-36245350)
[»] chr1 (23 HSPs)
chr1 (57-116)||(17815663-17815722)
chr1 (54-118)||(38869063-38869127)
chr1 (54-117)||(7124322-7124385)
chr1 (54-116)||(40920568-40920630)
chr1 (54-118)||(6025786-6025850)
chr1 (54-118)||(38877380-38877444)
chr1 (54-118)||(42501289-42501353)
chr1 (79-118)||(14225873-14225912)
chr1 (54-121)||(15577599-15577666)
chr1 (78-121)||(30396763-30396806)
chr1 (70-121)||(50257767-50257818)
chr1 (54-96)||(13827639-13827681)
chr1 (54-112)||(25460162-25460220)
chr1 (65-118)||(10569108-10569161)
chr1 (54-115)||(30017092-30017153)
chr1 (54-118)||(109030-109094)
chr1 (78-118)||(2545136-2545176)
chr1 (54-86)||(17267799-17267831)
chr1 (54-86)||(17275366-17275398)
chr1 (55-115)||(24596767-24596827)
chr1 (54-118)||(27072524-27072588)
chr1 (54-118)||(34444537-34444601)
chr1 (53-121)||(48865741-48865809)
[»] chr2 (14 HSPs)
chr2 (54-118)||(8197578-8197642)
chr2 (54-118)||(8202338-8202402)
chr2 (54-117)||(37470171-37470234)
chr2 (54-120)||(26784375-26784441)
chr2 (66-117)||(16626002-16626053)
chr2 (54-120)||(19336928-19336994)
chr2 (54-116)||(32402681-32402743)
chr2 (69-121)||(6219161-6219213)
chr2 (53-121)||(9496046-9496114)
chr2 (54-122)||(19235017-19235085)
chr2 (54-122)||(33287602-33287670)
chr2 (65-118)||(8187299-8187352)
chr2 (66-115)||(29159286-29159335)
chr2 (78-118)||(19224986-19225026)
[»] chr8 (14 HSPs)
chr8 (54-118)||(23492215-23492279)
chr8 (54-112)||(11733928-11733986)
chr8 (56-118)||(12611680-12611742)
chr8 (54-98)||(3638390-3638434)
chr8 (54-118)||(39967536-39967600)
chr8 (54-117)||(30748644-30748707)
chr8 (79-116)||(26642708-26642745)
chr8 (54-118)||(14459076-14459140)
chr8 (79-115)||(26639232-26639268)
chr8 (80-116)||(27480168-27480204)
chr8 (54-118)||(29520830-29520894)
chr8 (54-118)||(30783079-30783143)
chr8 (93-121)||(33118206-33118234)
chr8 (54-118)||(43904702-43904766)
[»] chr5 (11 HSPs)
chr5 (54-118)||(4026365-4026429)
chr5 (54-118)||(18350939-18351003)
chr5 (80-125)||(38657050-38657095)
chr5 (58-118)||(2645175-2645235)
chr5 (54-118)||(12576897-12576961)
chr5 (70-121)||(683735-683786)
chr5 (83-146)||(29922494-29922557)
chr5 (56-118)||(15588427-15588489)
chr5 (54-115)||(27998622-27998683)
chr5 (78-115)||(36123222-36123259)
chr5 (80-121)||(41894280-41894321)
[»] scaffold0180 (1 HSPs)
scaffold0180 (54-116)||(25482-25544)
[»] scaffold0392 (1 HSPs)
scaffold0392 (65-121)||(6806-6862)
[»] scaffold0287 (1 HSPs)
scaffold0287 (55-121)||(16462-16528)


Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 18 - 624
Target Start/End: Complemental strand, 7970518 - 7969908
Alignment:
Q  18 catgtcagtgtctgtgtccggatctgtgcttcatagttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7970518 catgtcagtgtctgtgtccggatctgtgcttcatagttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 7970419  T
Q  118 caacttcatttgattggataagccttggtcagttggttgttgtcgggagaagggtctgtatttagtctataaaagtacttggaacatgattacctccaaa 217  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |     
T  7970418 caactccatttgattggataagccgtggtcagttggttgttgtcgggagaagggtctgtatttagtctataaaagtatttggaacatgattacctccgag 7970319  T
Q  218 ggaagaaacctacgaaaactcaataaaaattataggatattggataatataggttttagaca---------aaaaagctatattatattgtgctttgagt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |         |||||||||||||||||||||||||||||    
T  7970318 ggaagaaacctacgaaaactcaataaaaattataggatattggataatatagcttttagaaagaaaaaaaaaaaaagctatattatattgtgctttgagt 7970219  T
Q  309 ttactttattccttgttgaattatggtaacagattttatgtcata--ctatggttattataatttataagggcttaattaagttgttttgctatgtgttt 406  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||       |||||||||||||||||||||||||||||||    
T  7970218 ttactttattccttgttgaattatggtaacagattttatgtgatatactatggttattataa-------gggcttaattaagttgttttgctatgtgttt 7970126  T
Q  407 cgatacagtgggaagaagcctgaatatcttggagttcagaaaaactcatcagcattggctctgtgtccagcaactaagaattgtgtatcaacctccgaga 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7970125 cgatacagtgggaagaagcctgaatatcttggagttcagaaaaactcatcagcattggctctgtgtccagcaactaagaattgtgtatcaacctctgaga 7970026  T
Q  507 atgtcaatgatctcacccattatgctcctccttggtaaagtttccttctttttcttcagtggattttagccttagttttctgaaactatatgaattatct 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7970025 atgtcaatgatctcacccattatgctcctccttggtaaagtttccttctttttcttcagcggattttagccttagttttctgaaactatatgaattatct 7969926  T
Q  607 acaatttctgtttttcat 624  Q
    ||||||||||||||||||    
T  7969925 acaatttctgtttttcat 7969908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 44719462 - 44719398
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||||||||||||||  |||||| ||| | |||||||||||||||||||||||||||||    
T  44719462 ttaatgagttagatagaaatacggtatataatagagcattatggtgtcgtttgatccatgtagcc 44719398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 47372832 - 47372896
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| ||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||    
T  47372832 ttaatgagttggatagaaatatggtatattatagaacattatggagtcgtttgatccatgtagcc 47372896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 37042761 - 37042701
Alignment:
Q  58 tgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||| ||||||||||  |||| ||||| |||||||||||||||||||||||||||||||    
T  37042761 tgagttggatagaaatacggtatttgatagaacattatggtgtcgtttgatccatgtagcc 37042701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 7682011 - 7681948
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 117  Q
    |||||||||||||||||||||| ||||||||||  ||||||| |  ||||||||||||||||||    
T  7682011 ttaatgagttagatagaaatatggtatatgataggacattattgcatcgtttgatccatgtagc 7681948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 8599043 - 8598978
Alignment:
Q  53 gttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||||||| |||||||  |||| ||||| |||||||||| |||||||||| |||||||||    
T  8599043 gttaatgagttagaaagaaataaggtatttgatagaacattatggcgtcgtttgattcatgtagcc 8598978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 29209276 - 29209212
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| ||||||||||| |||||||||| | |||||||| || |||||||| ||||||||    
T  29209276 ttaatgagttggatagaaatatggtatatgatagagcattatggcgttgtttgatcaatgtagcc 29209212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 41192242 - 41192306
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| ||||||||||| ||||||| || ||||||||||  ||||| |||||||||||||    
T  41192242 ttaatgagttggatagaaatatggtatatggtagaacattatggcttcgttcgatccatgtagcc 41192306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 38903819 - 38903752
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    |||||||||| |||||| ||||  ||||||| | ||||||||||  ||||||||||||||||||||||    
T  38903819 ttaatgagtttgatagagatatgatatatgacataacattatggcatcgtttgatccatgtagccaac 38903752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 42639121 - 42639054
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    |||||||||| ||||||||||| |||| ||||| |||||||||| ||||| | || ||||||||||||    
T  42639121 ttaatgagttggatagaaatatggtatttgatagaacattatggcgtcgtgtaattcatgtagccaac 42639054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 2557773 - 2557680
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattat-ggtgtcgtttgatccatgtagccaacttcatttgattggataagccttggt 146  Q
    |||| ||||| ||| ||||||| || ||||||| |||||||| |||||  |||||||||||||||||||| |||||  | ||||||| ||||||    
T  2557773 ttaacgagttggatcgaaatatggtttatgatagaacattattggtgtaatttgatccatgtagccaactccatttagtgggataaggcttggt 2557680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 20105604 - 20105553
Alignment:
Q  69 gaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaa 120  Q
    ||||||| ||||||||||  ||||||||| ||| ||||||||||||||||||    
T  20105604 gaaatatggtatatgataggacattatggcgtcatttgatccatgtagccaa 20105553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 25575005 - 25575068
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 117  Q
    |||||||||| ||| ||||||| || ||||||| |||||| ||||||  |||||||||||||||    
T  25575005 ttaatgagttggatcgaaatatggtttatgatagaacattgtggtgtaatttgatccatgtagc 25575068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 54470388 - 54470455
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    |||||||||| ||||||||||| ||||||||   | |||||| | ||| |||||||||||||||||||    
T  54470388 ttaatgagttggatagaaatatggtatatgactgagcattattgcgtcatttgatccatgtagccaac 54470455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 31403135 - 31403073
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 116  Q
    ||||| |||| ||||||||| | |||||||||| | ||||||||||| | |||||||||||||    
T  31403135 ttaattagttggatagaaatgtggtatatgatagagcattatggtgttgcttgatccatgtag 31403073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 32339740 - 32339802
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 116  Q
    |||| ||||| |||||| ||||  ||||||||| || ||||||| ||||||||||||||||||    
T  32339740 ttaacgagttggatagagatatgatatatgatagaaaattatggcgtcgtttgatccatgtag 32339802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 40018288 - 40018226
Alignment:
Q  56 aatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||| |||||  ||||  ||||||||| ||||||| || ||||||||||||||||||||    
T  40018288 aatgagttggatagggatatgatatatgatagaacattacggcgtcgtttgatccatgtagcc 40018226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 55029002 - 55029056
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgat 108  Q
    |||||||| |||||||||||||  ||||||||| |||||||||| ||| ||||||    
T  55029002 ttaatgagctagatagaaatatgttatatgatagaacattatggcgtcatttgat 55029056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 48174168 - 48174131
Alignment:
Q  80 tatgataaaacattatggtgtcgtttgatccatgtagc 117  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  48174168 tatgataaaacattatggcgtcatttgatccatgtagc 48174131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 44047472 - 44047404
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaa-cattatggtgtcgtttgatccatgtagccaac 121  Q
    |||||||||| ||||  ||||| ||||||||||| | ||| |||||| |||||||| ||||||||||||    
T  44047472 ttaatgagttggataataatatggtatatgataagagcataatggtgacgtttgattcatgtagccaac 44047404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 55388312 - 55388252
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgt 114  Q
    |||||||||||||| |||||||  | ||||||| |||||| ||||||  ||||||||||||    
T  55388312 ttaatgagttagatcgaaatatgatttatgatagaacattgtggtgtaatttgatccatgt 55388252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 32945429 - 32945493
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||    
T  32945429 ttaatgagttagatagaaatattttatatgatagaacattatggtgtcgtttgatccatgtagcc 32945493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 1748046 - 1747984
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 116  Q
    |||||||||| |||||||||||||||||||||| ||||||| |  ||||||||||||||||||    
T  1748046 ttaatgagttggatagaaatatagtatatgatagaacattacgacgtcgtttgatccatgtag 1747984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 6293493 - 6293429
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||||||||||||||| |||||||||| | ||||||||   |||||| || ||||||||    
T  6293493 ttaatgagttagatagaaatatggtatatgatagagcattatggcaacgtttggtcaatgtagcc 6293429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 34606 - 34543
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 117  Q
    |||||||||| ||| ||||||| || ||||||| |||||||||| ||  |||||||||||||||    
T  34606 ttaatgagttggattgaaatatggtttatgatagaacattatggcgtaatttgatccatgtagc 34543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 35199723 - 35199681
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatgg 97  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  35199723 ttaatgagttagatagaaatat-gtatatgatagaacattatgg 35199681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 413275 - 413328
Alignment:
Q  65 gatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    ||||||||||| |||||||||| || ||||| ||||| ||||||| ||||||||    
T  413275 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagcc 413328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 3210609 - 3210546
Alignment:
Q  54 ttaatgagttagatagaaatat-agtatatgataaaacattatggtgtcgtttgatccatgtagc 117  Q
    |||||||||| ||| ||||||| ||| ||||||| |||||||||||||  |||||||||||||||    
T  3210609 ttaatgagttggatggaaatatgagt-tatgatagaacattatggtgtaatttgatccatgtagc 3210546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 5053707 - 5053771
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| | ||| ||||| |||||||||||| |||| | | ||||||||||| ||||||||    
T  5053707 ttaatgagttggttaggaatatggtatatgataaagcattgttgcgtcgtttgatcaatgtagcc 5053771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 7267475 - 7267423
Alignment:
Q  65 gatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 117  Q
    |||| ||||||  ||||||||  ||||||||| ||||||||||||||||||||    
T  7267475 gataaaaatatgatatatgatgcaacattatgatgtcgtttgatccatgtagc 7267423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 55244459 - 55244518
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatg 113  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  55244459 ttaatgagttggatagaaatatggtatatgatagaacattatggtgtcgtttgatccatg 55244518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 41842625 - 41842550
Alignment:
Q  53 gttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaacttcattt 128  Q
    ||||||||||||||| ||||||| || | ||||| |||||||||||||  |||||||||||||| |||| ||||||    
T  41842625 gttaatgagttagattgaaatatggtttttgatagaacattatggtgtaatttgatccatgtagtcaacctcattt 41842550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 42026637 - 42026573
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||||||||||||||| |||||||||| |||||||||| ||  |||||| ||| |||||    
T  42026637 ttaatgagttagatagaaatatggtatatgatagaacattatggcgttatttgattcatttagcc 42026573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 11284169 - 11284236
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    |||||||||| |||| |||||| |||||||||  |||||||| |  ||||||||||||||||||||||    
T  11284169 ttaatgagttggatataaatatggtatatgattgaacattattgcatcgtttgatccatgtagccaac 11284236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 46140588 - 46140650
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 116  Q
    |||||||||| |||||||||||||  || |||| |||||||||| || |||||||||||||||    
T  46140588 ttaatgagtttgatagaaatatagcttacgatagaacattatggagttgtttgatccatgtag 46140650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 41971371 - 41971303
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaact 122  Q
    ||||||||||  | ||||||||  ||||||||| |||||||||  || |||||||||||||||||||||    
T  41971371 ttaatgagttgtacagaaatatgatatatgatagaacattatgacgttgtttgatccatgtagccaact 41971303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 29601073 - 29601136
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 117  Q
    |||||||||| |||  ||||||||| ||||||| ||||||||| |||  |||||||||||||||    
T  29601073 ttaatgagttggattcaaatatagtttatgatagaacattatgatgtaatttgatccatgtagc 29601136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 49841797 - 49841860
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 117  Q
    |||||||||| ||| ||||||| |||||||||| ||||||||||  |  |||||||||||||||    
T  49841797 ttaatgagttggatcgaaatatggtatatgatagaacattatggcataatttgatccatgtagc 49841860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 39535477 - 39535440
Alignment:
Q  78 tatatgataaaacattatggtgtcgtttgatccatgta 115  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  39535477 tatatgatagaacattatggtggcgtttgatccatgta 39535440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 36515044 - 36515012
Alignment:
Q  23 cagtgtctgtgtccggatctgtgcttcatagtt 55  Q
    ||||||||||||||| |||||||||||||||||    
T  36515044 cagtgtctgtgtccgtatctgtgcttcatagtt 36515012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 46367464 - 46367424
Alignment:
Q  78 tatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    ||||||||| |||||||||  ||||||||||||||||||||    
T  46367464 tatatgatagaacattatgacgtcgtttgatccatgtagcc 46367424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 50237731 - 50237671
Alignment:
Q  58 tgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||| ||||||||||| |||||||||| |||||||  |   ||||||||||||||||||    
T  50237731 tgagttggatagaaatattgtatatgatagaacattactgctccgtttgatccatgtagcc 50237671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 6807388 - 6807447
Alignment:
Q  57 atgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 116  Q
    ||||||||||||||||||| || ||||||| |||||||||| ||||||||||||||||||    
T  6807388 atgagttagatagaaatatggtgtatgatagaacattatggcgtcgtttgatccatgtag 6807447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 22174181 - 22174245
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    ||||||| |||||||||||||| |||| ||||| |||||||||| || |||||||||||||||||    
T  22174181 ttaatgaattagatagaaatatggtatgtgatagaacattatggcgttgtttgatccatgtagcc 22174245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 21078124 - 21078190
Alignment:
Q  80 tatgataaaacattatggtgtcgtttgatccatgtagccaacttcatttgattggataagccttggt 146  Q
    ||||||| |||||||||| ||| |||||||||||||||| |||||||||  | ||||||| ||||||    
T  21078124 tatgatagaacattatggcgtcatttgatccatgtagccgacttcatttagtgggataaggcttggt 21078190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 3629557 - 3629623
Alignment:
Q  55 taatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    |||| |||||||||||||||| |||||||||| | |||||| |  || ||||||| |||||||||||    
T  3629557 taattagttagatagaaatatggtatatgatagagcattattgcatcttttgatcgatgtagccaac 3629623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 39812144 - 39812181
Alignment:
Q  79 atatgataaaacattatggtgtcgtttgatccatgtag 116  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  39812144 atatgatagaacattatgatgtcgtttgatccatgtag 39812181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 9210806 - 9210742
Alignment:
Q  53 gttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 117  Q
    ||||||||||| |||  |||||| || ||||||| |||||||||| ||  |||||||||||||||    
T  9210806 gttaatgagttggatccaaatatggtttatgatacaacattatggcgtaatttgatccatgtagc 9210742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 12966197 - 12966261
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    ||||||| || ||||||||||| |||||||||||| |||||||   | ||||||| |||||||||    
T  12966197 ttaatgatttggatagaaatatggtatatgataaatcattatgccattgtttgattcatgtagcc 12966261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 14057658 - 14057726
Alignment:
Q  53 gttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    ||||||| ||| |||  |||||| || ||||||| |||||||||| ||  |||||||||||||||||||    
T  14057658 gttaatgcgttcgattcaaatatggtttatgatagaacattatggggtaatttgatccatgtagccaac 14057726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 14367686 - 14367754
Alignment:
Q  53 gttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    ||||||| ||| |||  |||||| || ||||||| |||||||||| ||  |||||||||||||||||||    
T  14367686 gttaatgcgttcgattcaaatatggtttatgatagaacattatggggtaatttgatccatgtagccaac 14367754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 36245350 - 36245295
Alignment:
Q  60 agttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 116  Q
    |||||||||||| ||| |||||||||| |||||||||  ||||||||||||| ||||    
T  36245350 agttagatagaa-tatggtatatgatagaacattatgacgtcgtttgatccacgtag 36245295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 17815663 - 17815722
Alignment:
Q  57 atgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 116  Q
    ||||||||||||||||||| |||||||||| | |||| ||||||||||||||||||||||    
T  17815663 atgagttagatagaaatatggtatatgatagagcattttggtgtcgtttgatccatgtag 17815722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 38869063 - 38869127
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||| ||| |||||| |||| |||||||||| |||||||||| ||||||||||||||||||||    
T  38869063 ttaatgggttggatagatatatggtatatgatagaacattatggcgtcgtttgatccatgtagcc 38869127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 7124322 - 7124385
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 117  Q
    ||||||| || ||||||||||| ||||| |||| | ||||||||||||||||||||||||||||    
T  7124322 ttaatgaattggatagaaatatggtataggatagagcattatggtgtcgtttgatccatgtagc 7124385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 40920630 - 40920568
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 116  Q
    |||||||||| ||||||||||| |||||||||| || ||||||||||| |||||| |||||||    
T  40920630 ttaatgagttggatagaaatatggtatatgatagaatattatggtgtcttttgattcatgtag 40920568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 6025786 - 6025850
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| ||||||||||| |||| ||||| ||||| |||| ||| ||||||||||||||||    
T  6025786 ttaatgagttggatagaaatatggtatctgatagaacatgatggcgtcatttgatccatgtagcc 6025850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 38877444 - 38877380
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||| ||||| |||||  |||||||||| |||| |||||||||| ||| ||||||||||||||||    
T  38877444 ttaacgagttggatagggatatagtatacgatagaacattatggcgtcatttgatccatgtagcc 38877380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 42501289 - 42501353
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| ||||||||||| | |||||||| |||||||  | ||||||| ||||||||||||    
T  42501289 ttaatgagttggatagaaatatggaatatgatagaacattacagcgtcgtttaatccatgtagcc 42501353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 14225912 - 14225873
Alignment:
Q  79 atatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  14225912 atatgatagaacagtatggtgtcgtttgatccatgtagcc 14225873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 15577599 - 15577666
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    |||||||||| |||||| ||||  ||| ||||| |||||||| |||| |||||||||||||| |||||    
T  15577599 ttaatgagttggatagagatatgatatttgatagaacattattgtgttgtttgatccatgtacccaac 15577666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 30396806 - 30396763
Alignment:
Q  78 tatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||    
T  30396806 tatatgatagaacattatggtggcgtttgatccgtgtagccaac 30396763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 50257767 - 50257818
Alignment:
Q  70 aaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    |||||| || ||||||| |||||||||||||  |||||||||||||||||||    
T  50257767 aaatatggtttatgatagaacattatggtgtaatttgatccatgtagccaac 50257818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 13827681 - 13827639
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatg 96  Q
    |||||||||| ||||||||||| |||||||||| |||||||||    
T  13827681 ttaatgagttggatagaaatatggtatatgatagaacattatg 13827639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 25460220 - 25460162
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccat 112  Q
    |||||||||| ||||||||||| |||||| ||| ||||| | ||||| |||||||||||    
T  25460220 ttaatgagtttgatagaaatatggtatataatagaacatcacggtgttgtttgatccat 25460162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 10569161 - 10569108
Alignment:
Q  65 gatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    ||||||||||| |||||||||| ||||||||  | || ||||||||||||||||    
T  10569161 gatagaaatatcgtatatgatagaacattataatatcatttgatccatgtagcc 10569108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 30017153 - 30017092
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgta 115  Q
    ||||||||||||||||| |||   |||  || | ||||||||||||||||||||||||||||    
T  30017153 ttaatgagttagatagagataccatatccgacagaacattatggtgtcgtttgatccatgta 30017092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 109094 - 109030
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| |||| | ||||  | ||||||| |||||||||| ||| ||||||||||||||||    
T  109094 ttaatgagttggataaatatatgatgtatgatagaacattatggcgtcatttgatccatgtagcc 109030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 2545176 - 2545136
Alignment:
Q  78 tatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    ||||||||| |||||||||||||||||||||| || |||||    
T  2545176 tatatgatagaacattatggtgtcgtttgatcaatttagcc 2545136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 17267831 - 17267799
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgata 86  Q
    |||||||||||||||||||||| ||||||||||    
T  17267831 ttaatgagttagatagaaatatggtatatgata 17267799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 17275366 - 17275398
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgata 86  Q
    |||||||||||||||||||||| ||||||||||    
T  17275366 ttaatgagttagatagaaatatggtatatgata 17275398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 24596767 - 24596827
Alignment:
Q  55 taatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgta 115  Q
    ||||||||| ||||||| ||  |||||||||| ||||| ||| |||||||||||| |||||    
T  24596767 taatgagttcgatagaattaatgtatatgatataacataatgatgtcgtttgatctatgta 24596827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 27072588 - 27072524
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||| ||||| || |||||||| || ||||||| |||||||||| ||  ||||||||||||||||    
T  27072588 ttaaagagttggacagaaatatggtttatgatagaacattatggcgtaatttgatccatgtagcc 27072524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 34444537 - 34444601
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| |||  |||||| || ||| |||||||||||||||||  ||||||| ||||||||    
T  34444537 ttaatgagttggatccaaatatggtttataataaaacattatggtgtaatttgatctatgtagcc 34444601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 48865809 - 48865741
Alignment:
Q  53 gttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    |||||||| ||||||  | |||| || ||||||| || ||||||||||  |||||||||||||||||||    
T  48865809 gttaatgaattagatccagatatggtttatgatagaatattatggtgtaatttgatccatgtagccaac 48865741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 8197642 - 8197578
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| |||||||||||  ||||||||| || ||||||| ||||||||||||||||||||    
T  8197642 ttaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagcc 8197578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 8202402 - 8202338
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| |||||||||||  ||||||||| || ||||||| ||||||||||||||||||||    
T  8202402 ttaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagcc 8202338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 37470234 - 37470171
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 117  Q
    |||||||||| ||| ||||||| | |||||||| ||||||||||||| ||||||||||||||||    
T  37470234 ttaatgagttggatcgaaatatggcatatgatagaacattatggtgtagtttgatccatgtagc 37470171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 26784441 - 26784375
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaa 120  Q
    ||||||||||  |||||||||| ||||||||||||||||| |||| |  ||||||||||||||||||    
T  26784441 ttaatgagttgaatagaaatatggtatatgataaaacattttggtttaatttgatccatgtagccaa 26784375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 16626053 - 16626002
Alignment:
Q  66 atagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 117  Q
    |||||||||| |||| ||||| ||| ||||||||||||||||||||||||||    
T  16626053 atagaaatatggtatttgatagaacgttatggtgtcgtttgatccatgtagc 16626002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 19336994 - 19336928
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaa 120  Q
    |||||||||| ||| ||||||| || ||||||| |||||||||| ||  ||||||||||||||||||    
T  19336994 ttaatgagttggatcgaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccaa 19336928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 32402681 - 32402743
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 116  Q
    |||||||||| ||||||||||  |||||||||| ||||||||||| || ||||||||| ||||    
T  32402681 ttaatgagttggatagaaataaggtatatgatagaacattatggtttcatttgatccacgtag 32402743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 6219161 - 6219213
Alignment:
Q  69 gaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    ||||||| || ||||||| |||||||||||||  |||||||||||||||||||    
T  6219161 gaaatatggtttatgatagaacattatggtgtaatttgatccatgtagccaac 6219213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 9496046 - 9496114
Alignment:
Q  53 gttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    ||||||||||| |||  |||||| || ||||||| |||||||||| ||  |||||||||||||||||||    
T  9496046 gttaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccaac 9496114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 19235085 - 19235017
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaact 122  Q
    ||||||| || ||||||||||| |||| ||||| |||||| ||  ||||||| ||||||||||||||||    
T  19235085 ttaatgatttggatagaaatatggtatttgatagaacattctgtcgtcgtttaatccatgtagccaact 19235017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 33287602 - 33287670
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaact 122  Q
    |||||||||||||| ||||||| || ||||||| |||||||||   | ||||||||| |||||||||||    
T  33287602 ttaatgagttagatcgaaatatggtttatgatagaacattatgacatagtttgatccttgtagccaact 33287670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 8187299 - 8187352
Alignment:
Q  65 gatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    ||||||| ||| |||| | ||| ||||||||||||| |||||||||||||||||    
T  8187299 gatagaagtatggtatttaatacaacattatggtgttgtttgatccatgtagcc 8187352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 29159286 - 29159335
Alignment:
Q  66 atagaaatatagtatatgataaaacattatggtgtcgtttgatccatgta 115  Q
    ||||||||||  ||| |||||||| ||||||| |||||||||||||||||    
T  29159286 atagaaatatgatatttgataaaatattatggcgtcgtttgatccatgta 29159335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 19224986 - 19225026
Alignment:
Q  78 tatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    ||||||||| |||| |||| |||||||||||||||||||||    
T  19224986 tatatgatagaacactatgatgtcgtttgatccatgtagcc 19225026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 23492215 - 23492279
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| |||||||||||  ||||||||| |||| ||||||||| ||| ||||||||||||    
T  23492215 ttaatgagttggatagaaatatgatatatgatagaacactatggtgtcatttaatccatgtagcc 23492279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 11733928 - 11733986
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccat 112  Q
    |||||||||||||||||||||| |||| ||||| | |||||||| ||||||||| ||||    
T  11733928 ttaatgagttagatagaaatatggtatgtgatagagcattatggcgtcgtttgaaccat 11733986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 12611680 - 12611742
Alignment:
Q  56 aatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||| | |||||||||  |||||| || ||| |||||||||||||||||||||||||||    
T  12611680 aatgagttgggtagaaatatgatatatgttagaactttatggtgtcgtttgatccatgtagcc 12611742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 3638434 - 3638390
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggt 98  Q
    |||||||||| || ||||||||||||||||||| |||||||||||    
T  3638434 ttaatgagttggacagaaatatagtatatgatagaacattatggt 3638390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 39967600 - 39967536
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| ||| || ||||||| |||| || |||||||||| || |||||||||||||||||    
T  39967600 ttaatgagttggattgagatatagtttatgttagaacattatggcgtagtttgatccatgtagcc 39967536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 30748644 - 30748707
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 117  Q
    |||||||||| |||||||||||  ||||| ||  ||||||||| |||| |||||||||||||||    
T  30748644 ttaatgagttggatagaaatatgatatataattgaacattatgatgtcatttgatccatgtagc 30748707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 26642708 - 26642745
Alignment:
Q  79 atatgataaaacattatggtgtcgtttgatccatgtag 116  Q
    |||||||| | |||||||||||||||||||||||||||    
T  26642708 atatgatagatcattatggtgtcgtttgatccatgtag 26642745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 14459076 - 14459140
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||||||   |||||| || ||||||  |||||||||||||  ||||||||||||||||    
T  14459076 ttaatgagttagaccaaaatatggtttatgatggaacattatggtgtaatttgatccatgtagcc 14459140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 26639232 - 26639268
Alignment:
Q  79 atatgataaaacattatggtgtcgtttgatccatgta 115  Q
    |||||||| | ||||||||||||||||||||||||||    
T  26639232 atatgatagatcattatggtgtcgtttgatccatgta 26639268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 27480168 - 27480204
Alignment:
Q  80 tatgataaaacattatggtgtcgtttgatccatgtag 116  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  27480168 tatgatagaacattatggtgtagtttgatccatgtag 27480204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 29520830 - 29520894
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| |||  |||||| || ||||||| |||||||||| ||  ||||||||||||||||    
T  29520830 ttaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagcc 29520894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 30783143 - 30783079
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| ||| ||||||  || ||| |||||||||||||  || |||||||||||||||||    
T  30783143 ttaatgagttggatcgaaatacggtttataataaaacattatgaggtagtttgatccatgtagcc 30783079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 33118234 - 33118206
Alignment:
Q  93 tatggtgtcgtttgatccatgtagccaac 121  Q
    |||||||||||||||||||||||||||||    
T  33118234 tatggtgtcgtttgatccatgtagccaac 33118206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 43904766 - 43904702
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| |||  |||||| || ||||||| |||||||||| ||  ||||||||||||||||    
T  43904766 ttaatgagttggatctaaatatggtttatgatagaacattatggcgtaatttgatccatgtagcc 43904702  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 4026429 - 4026365
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||| ||| ||||| |||||||||||  |||||||||||||  ||||||||||||||||||||    
T  4026429 ttaatgggtttgataggaatatagtatacaataaaacattatgacgtcgtttgatccatgtagcc 4026365  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 18351003 - 18350939
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||||| ||||||||||| |||| || || |||||||||  ||||||||||||||||||||    
T  18351003 ttaatgagttggatagaaatatggtatttgttagaacattatgacgtcgtttgatccatgtagcc 18350939  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 38657050 - 38657095
Alignment:
Q  80 tatgataaaacattatggtgtcgtttgatccatgtagccaacttca 125  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||||    
T  38657050 tatgatagaacattatgatgtcgtttgattcatgtagccaacttca 38657095  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 2645175 - 2645235
Alignment:
Q  58 tgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||| ||||||||| | |||| |||||||||||||| |  |||||||||||||||||||    
T  2645175 tgagttggatagaaatgtggtatttgataaaacattatagcatcgtttgatccatgtagcc 2645235  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 12576961 - 12576897
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    ||||||||||  |||||||||| |||||||||| | |||||||||||| ||| || |||||||||    
T  12576961 ttaatgagttgaatagaaatatggtatatgatagaccattatggtgtcattttatacatgtagcc 12576897  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 683786 - 683735
Alignment:
Q  70 aaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    |||||| || ||||||| ||||||||| ||| ||||||||||||||||||||    
T  683786 aaatatggtttatgatagaacattatgttgtagtttgatccatgtagccaac 683735  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 29922494 - 29922557
Alignment:
Q  83 gataaaacattatggtgtcgtttgatccatgtagccaacttcatttgattggataagccttggt 146  Q
    |||| |||||||||| ||  ||||||||||||||||||| ||| ||| | ||||||||||||||    
T  29922494 gatagaacattatggcgtaatttgatccatgtagccaacctcacttggtgggataagccttggt 29922557  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 15588489 - 15588427
Alignment:
Q  56 aatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 118  Q
    |||||||| |||| ||| || |||||||| | |||||||||| ||||||||||| ||||||||    
T  15588489 aatgagttggataaaaacatggtatatgacagaacattatggcgtcgtttgatctatgtagcc 15588427  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 27998622 - 27998683
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgta 115  Q
    |||||||||||||||| || ||  ||||||||| || ||||||  |||||||||||||||||    
T  27998622 ttaatgagttagataggaacatgatatatgatagaatattatgacgtcgtttgatccatgta 27998683  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 36123259 - 36123222
Alignment:
Q  78 tatatgataaaacattatggtgtcgtttgatccatgta 115  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  36123259 tatatgatagaacattatggtggcgtttgatccatgta 36123222  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 41894280 - 41894321
Alignment:
Q  80 tatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    ||||||| |||||||||||||  |||||||||||||||||||    
T  41894280 tatgatacaacattatggtgtaatttgatccatgtagccaac 41894321  T

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Target: scaffold0180 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 25544 - 25482
Alignment:
Q  54 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 116  Q
    |||||||||| ||||||||||   ||||||||||||||||||||  |||||||||| ||||||    
T  25544 ttaatgagttggatagaaataagttatatgataaaacattatggcttcgtttgatctatgtag 25482  T

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Target: scaffold0392 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 6862 - 6806
Alignment:
Q  65 gatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    ||||||||||| |||||||||| ||||||||||  |  |||||||||||||||||||    
T  6862 gatagaaatatggtatatgatataacattatggcataatttgatccatgtagccaac 6806  T

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Target: scaffold0287 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 16528 - 16462
Alignment:
Q  55 taatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 121  Q
    |||| |||||||||||||||| |||||||||| | |||||| |  || ||||||| |||||||||||    
T  16528 taattagttagatagaaatatggtatatgatagagcattattgcatcttttgatcgatgtagccaac 16462  T

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