View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20744_low_20 (Length: 226)
Name: NF20744_low_20
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20744_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 33647970 - 33647753
Alignment:
| Q |
1 |
cgaaactcggggcaagggacacatgtgtaatgatatttcctcggatcacggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatcat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33647970 |
cgaaactcggggcaagggacacatgtgtaatgacatttcctcagatcgcggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatcat |
33647871 |
T |
|
| Q |
101 |
gagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgtactatatattccattttttatgtcaggtagggatggatcaat |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33647870 |
gagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgtactatatattccattctttatgtcaggtagggatggatcaat |
33647771 |
T |
|
| Q |
201 |
gggatgatctttcttctc |
218 |
Q |
| |
|
||||| |||||||||||| |
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| T |
33647770 |
gggataatctttcttctc |
33647753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 25812771 - 25812555
Alignment:
| Q |
1 |
cgaaactcggggcaagggacacatgtgtaatgatatttcctcggatcacggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |
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| T |
25812771 |
cgaaactcggggcaagggacacatgtgtaatgatatttcctcgaatcacggcgccttgcgtt-tcccctggatgaacaaaggggcactcagtccaatcat |
25812673 |
T |
|
| Q |
101 |
gagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgtactatatattccattttttatgtcaggtagggatggatcaat |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| |
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| T |
25812672 |
gagaataa-cccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgtactatatatctcattgtttatgtcaggtagggatggattaat |
25812574 |
T |
|
| Q |
201 |
gggatgatctttcttctca |
219 |
Q |
| |
|
|||| ||||||||||||| |
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| T |
25812573 |
tggataatctttcttctca |
25812555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 25818425 - 25818220
Alignment:
| Q |
14 |
aagggacacatgtgtaatgatatttcctcggatcacggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatcatgagaataagccct |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||| || ||||| || || |||||| |||||| ||||||||||||| ||||||||| |
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| T |
25818425 |
aagggacacaggtgtaatgatatttcctcagatcacggcgccttgcgttttccccggggtggacaaagtggcacttggtccaatcatgaggataagccct |
25818326 |
T |
|
| Q |
114 |
tgaacaaggcttcactttgaatgtaaacatcctaaattcatctgtactatatattccattttttatgtcaggtagggatggatcaatgggatgatctttc |
213 |
Q |
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| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||| |||| ||||||| |
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| T |
25818325 |
taaacaaggcttccctttgaatgcaaacatcctaaattcatctgtgctatatatctcattttttatgccaggtatggatggatcaattggataatctttc |
25818226 |
T |
|
| Q |
214 |
ttctca |
219 |
Q |
| |
|
|||||| |
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|
| T |
25818225 |
ttctca |
25818220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 25821784 - 25821582
Alignment:
| Q |
17 |
ggacacatgtgtaatgatatttcctcggatcacggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatcatgagaa---taagccct |
113 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||||||||| | ||||||| |||| ||||||| || || ||||||||||||| | | | ||| |
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| T |
25821784 |
ggacacagctgtaataatatttcttcggatcacggcgccttgcgatttccccagaatgagcaaagggacattctgtccaatcatgaggagcattatccca |
25821685 |
T |
|
| Q |
114 |
tgaacaaggcttcactttgaatgtaaacatcctaaattcatctgtactatatattccattttttatgtcaggtagggatggatcaatgggatgatctttc |
213 |
Q |
| |
|
||| ||| |||||||||||||| || |||||||||||||||||||| |||||| |||| |||||||||||||||||| |||| || ||| ||||||| |
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| T |
25821684 |
tgagcaaagcttcactttgaatttatacatcctaaattcatctgtaatatatacctcattctttatgtcaggtagggatcgatcgatccgataatctttc |
25821585 |
T |
|
| Q |
214 |
ttc |
216 |
Q |
| |
|
||| |
|
|
| T |
25821584 |
ttc |
25821582 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 31810792 - 31810635
Alignment:
| Q |
1 |
cgaaactcggggcaagggacacatgtgtaatgatatttcctcggatcacggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatcat |
100 |
Q |
| |
|
|||||||||||||| || ||||| | ||| |||| ||||| ||||| | | ||| ||||||||||| ||||||||||| || |||||||||||||||| |
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| T |
31810792 |
cgaaactcggggcacggaacacagctataaggatacttccttggatctctcctcctagcattctcccctggatgaacaaatggacactcagtccaatcat |
31810693 |
T |
|
| Q |
101 |
gagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgt |
158 |
Q |
| |
|
||| ||| |||||||||||| ||| |||||||| || |||| |||||||||||||| |
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|
| T |
31810692 |
gagtgtaaccccttgaacaagtctttactttgaaactatacattctaaattcatctgt |
31810635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 9314781 - 9314827
Alignment:
| Q |
58 |
gcattctccccaggatgaacaaaggggcactcagtccaatcatgaga |
104 |
Q |
| |
|
|||||||| |||||||| ||||| || |||||||||||||||||||| |
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| T |
9314781 |
gcattctctccaggatgcacaaaaggacactcagtccaatcatgaga |
9314827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 30122398 - 30122217
Alignment:
| Q |
1 |
cgaaactcggggcaagggacacatgtgtaatgatatttcctcggatcacggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatcat |
100 |
Q |
| |
|
|||||||| || |||||||| || | |||||||||||||| ||||| || ||||||||||| ||||| ||||||||||| || ||||| |||||||||| |
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|
| T |
30122398 |
cgaaactcaggacaagggacgcagctataatgatatttccttggatcgcgtcgccttgcattttcccctggatgaacaaaaggacactcggtccaatcat |
30122299 |
T |
|
| Q |
101 |
gagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgtactatatattccattttttatgtc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||| || ||||| |
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|
| T |
30122298 |
gagaataagcccttgaacaaggcttcactttgaatgtatacatcctaaactcatcggtactatatatcccattcttaatgtc |
30122217 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 35643798 - 35643642
Alignment:
| Q |
1 |
cgaaactcggggcaagggacacatgtgtaatgatatttcctcggatcacggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatcat |
100 |
Q |
| |
|
|||||||| ||||| || ||||| ||||| | |||||||| || || | | |||||||||||| || |||||||||||||| ||||| |||||||| | |
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| T |
35643798 |
cgaaactctgggcagggaacacagctgtaagggtatttccttgggtctctcctccttgcattctcacctggatgaacaaagggacactccgtccaatcgt |
35643699 |
T |
|
| Q |
101 |
gagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctg |
157 |
Q |
| |
|
|||| |||||||| || || |||||||| ||||| | |||||||||| ||||||| |
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|
| T |
35643698 |
gagagtaagccctcgagcatggcttcaccttgaaactgtacatcctaaactcatctg |
35643642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 36456355 - 36456258
Alignment:
| Q |
13 |
caagggacacatgtgtaatgatatttcctcggatcacggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatcatgagaataagc |
110 |
Q |
| |
|
||||||||||| |||||||||| || ||||| || | | || ||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| |
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|
| T |
36456355 |
caagggacacagctgtaatgatactttctcgggtcccttctccgggcattctcccctggatgaacaaaagggcattcagtccaatcatgggaataagc |
36456258 |
T |
|
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