View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20744_low_3 (Length: 495)
Name: NF20744_low_3
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20744_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 20552476 - 20552603
Alignment:
| Q |
1 |
ttgtttcaaaagtgtgtaaaagcacacaactctacttgtccatctaatgataaaggtttctacacatgagtggtcaaatgatgtcacccaattagtccct |
100 |
Q |
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| T |
20552476 |
ttgtttcaaaagtgtgtaaaagcacacaactctacttgtccatctaatgataaaggtttctacacattagtggtcaaataatgtcaccaaattagtccct |
20552575 |
T |
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| Q |
101 |
caaagatacaacatagtcaccatatcta |
128 |
Q |
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| T |
20552576 |
caaagatacaacatagtcaccatatcta |
20552603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 20552810 - 20552870
Alignment:
| Q |
127 |
taatcataaaagagtgtaatgaattcacacacaatgatatcactaagtttccttcacaatg |
187 |
Q |
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| T |
20552810 |
taatcataaaagaatgtaatgaattcacacacaatgatatcactaagtttccttcacaatg |
20552870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 30695860 - 30695920
Alignment:
| Q |
269 |
taataagcttttaataagctagttagtaattgttttcatttttgctgcatgttgttactat |
329 |
Q |
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| T |
30695860 |
taataagcttttaataagctatttagtaattgttttcatttttgctgcatcttgttgctat |
30695920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 1215854 - 1215912
Alignment:
| Q |
272 |
taagcttttaataagctagttagtaattgttttcatttttgctgcatgttgttactata |
330 |
Q |
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| T |
1215854 |
taagcttttaataagctacttagtaattgttttcatttttgctgcattttgttgctata |
1215912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 480
Target Start/End: Complemental strand, 24743809 - 24743718
Alignment:
| Q |
392 |
ggaaggtgaatcagcgtatccaaaactgtgactattaatgatgtcggagaag---ttaattcggagaaattcaactgtgatgctaatgttat |
480 |
Q |
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| T |
24743809 |
ggaaggtaaatcagcgtatccaaaactgtgacgattatcgatgctggagaagttattaattcggagaaaatcaatggtgatgctaatgttat |
24743718 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 2509202 - 2509247
Alignment:
| Q |
223 |
ttagatttatttggtgatgaaattggataaatttttagttaagtta |
268 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
2509202 |
ttagatttatttggtgatgaaattggataaattttgaattaagtta |
2509247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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