View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20744_low_4 (Length: 469)
Name: NF20744_low_4
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20744_low_4 |
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| [»] scaffold0531 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 268 - 451
Target Start/End: Complemental strand, 41381883 - 41381700
Alignment:
| Q |
268 |
cagttactctgcaattgcttgggctggtagtgtacacaagggagtacaagcaaatgtagaatatactagcaaagccacgactagtgcaggatctgtcttt |
367 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41381883 |
cagttactctgcaattgcttgggttggtagtgtacacaagggagtacaagcaaatgtacaatatactagcaaagccacgactagtgcaggatctgtcttt |
41381784 |
T |
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| Q |
368 |
aatttctttaatgcacttggttctgttgcttttgcctatgcaggtcacaatgtggtgttggaaattcaatctacaatcccatct |
451 |
Q |
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| T |
41381783 |
aatttctttaatgcacttggttctgttgcttttgcctatgcaggacacaatgtggtgttggaaattcaatctacaatcccatct |
41381700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 41382138 - 41381971
Alignment:
| Q |
16 |
caaaaatttcacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcaatttgtattgtgtcatctac |
115 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41382138 |
caaaaatttcacaatacagtttgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcaatttgtattgtgtcatctac |
41382039 |
T |
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| Q |
116 |
caaacctcaactccctttctagtgtatcttttgttgcagcagttatgtccttttggtatatatgtcaa |
183 |
Q |
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| T |
41382038 |
ccaacctcaactccctttctagtgtatcttttgttgcagcagttatgtccttttggtatatatgtcaa |
41381971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 43854448 - 43854504
Alignment:
| Q |
391 |
tgttgcttttgcctatgcaggtcacaatgtggtgttggaaattcaatctacaatccc |
447 |
Q |
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| T |
43854448 |
tgttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatccc |
43854504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 7971739 - 7971590
Alignment:
| Q |
16 |
caaaaatttcacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcaatttgtattgtgtcatctac |
115 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
7971739 |
caaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcattttgtattgtctcatctac |
7971640 |
T |
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| Q |
116 |
caaacctcaactccctttctagtgtatcttttgttgcagcagttatgtcc |
165 |
Q |
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| T |
7971639 |
caaacttgaactccatttccggtgtatctttggtggcagccgtcatgtcc |
7971590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 8041949 - 8042098
Alignment:
| Q |
16 |
caaaaatttcacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcaatttgtattgtgtcatctac |
115 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
8041949 |
caaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcattttgtattgtctcatctac |
8042048 |
T |
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| Q |
116 |
caaacctcaactccctttctagtgtatcttttgttgcagcagttatgtcc |
165 |
Q |
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||||| | |||||| |||| |||||||||| || ||||| || |||||| |
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| T |
8042049 |
caaacttgaactccatttccggtgtatctttggtggcagccgtcatgtcc |
8042098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 268 - 429
Target Start/End: Complemental strand, 7971446 - 7971285
Alignment:
| Q |
268 |
cagttactctgcaattgcttgggctggtagtgtacacaagggagtacaagcaaatgtagaatatactagcaaagccacgactagtgcaggatctgtcttt |
367 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||| || ||||||| |||||| ||||||||| || |||| |||||||||||||||| |
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| T |
7971446 |
cagttactctacaattgcttgggctggtagtatacacaagggagtactagaaaatgtacaatatagtagcaaagctacaactactgcaggatctgtcttt |
7971347 |
T |
|
| Q |
368 |
aatttctttaatgcacttggttctgttgcttttgcctatgcaggtcacaatgtggtgttgga |
429 |
Q |
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|||||||||||||||||||| |||||||| ||||||| ||| || ||||| |||||| |||| |
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| T |
7971346 |
aatttctttaatgcacttggctctgttgcatttgcctttgccggacacaacgtggtgctgga |
7971285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 268 - 429
Target Start/End: Original strand, 8042267 - 8042428
Alignment:
| Q |
268 |
cagttactctgcaattgcttgggctggtagtgtacacaagggagtacaagcaaatgtagaatatactagcaaagccacgactagtgcaggatctgtcttt |
367 |
Q |
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|
|||||||||| |||||||||||||||||||| ||||||||||||||| || ||||||| |||||| ||||||||| || |||| |||||||||||||||| |
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| T |
8042267 |
cagttactctacaattgcttgggctggtagtatacacaagggagtactagaaaatgtacaatatagtagcaaagctacaactactgcaggatctgtcttt |
8042366 |
T |
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| Q |
368 |
aatttctttaatgcacttggttctgttgcttttgcctatgcaggtcacaatgtggtgttgga |
429 |
Q |
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||||||||||||||||||| |||||||| ||||||| ||| || |||| ||||||| |||| |
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| T |
8042367 |
tatttctttaatgcacttggctctgttgcatttgcctttgctggacacattgtggtgctgga |
8042428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 8032079 - 8032230
Alignment:
| Q |
25 |
cacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcaatttgtattgtgtcatctaccaaacctca |
124 |
Q |
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||||||||||||||| ||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
8032079 |
cacaatacagtgtgttcaagttgcaaaaatatcaaattgacctatttcattatgatctttgcctctgctcaatttgtattgtgtcatctaccaaacttga |
8032178 |
T |
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| Q |
125 |
actccctttctagtgtatcttttgttgcagcagttatgtccttttggtatat |
176 |
Q |
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||||| |||| ||||||| || ||||||||||| |||||| |||||||||| |
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| T |
8032179 |
actccatttccggtgtatccttggttgcagcagtcatgtccatttggtatat |
8032230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 268 - 424
Target Start/End: Original strand, 8032363 - 8032519
Alignment:
| Q |
268 |
cagttactctgcaattgcttgggctggtagtgtacacaagggagtacaagcaaatgtagaatatactagcaaagccacgactagtgcaggatctgtcttt |
367 |
Q |
| |
|
|||||| ||| ||||||||||| || ||||||||||||||||||||||| ||||||| |||||| |||||| || || | || ||||| ||| |||||| |
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| T |
8032363 |
cagttattctacaattgcttggactactagtgtacacaagggagtacaagaaaatgtacaatatagtagcaaggctacaaatactgcagaatcagtcttt |
8032462 |
T |
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| Q |
368 |
aatttctttaatgcacttggttctgttgcttttgcctatgcaggtcacaatgtggtg |
424 |
Q |
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||||||||||||||||| || |||||||| ||||||||||| || || ||||||||| |
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| T |
8032463 |
aatttctttaatgcactcggctctgttgcatttgcctatgctggacataatgtggtg |
8032519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 426
Target Start/End: Complemental strand, 7978294 - 7978221
Alignment:
| Q |
353 |
gcaggatctgtctttaatttctttaatgcacttggttctgttgcttttgcctatgcaggtcacaatgtggtgtt |
426 |
Q |
| |
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|||||| | |||||| | ||||||||||||||||| || |||||||||||||||| || |||||||||||||| |
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| T |
7978294 |
gcaggaacagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgtt |
7978221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 3253 - 3102
Alignment:
| Q |
25 |
cacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcaatttgtattgtgtcatctaccaaacctca |
124 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
3253 |
cacaatacagtgtgtccaagttgcaaaaatatcaaattgacatatttcattatgatctttgcctctgctcaatttgtattgtgtcatctaccaaacttga |
3154 |
T |
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| Q |
125 |
actccctttctagtgtatcttttgttgcagcagttatgtccttttggtatat |
176 |
Q |
| |
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||||| ||||| |||||||||| || |||||||| |||||| |||||||||| |
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| T |
3153 |
actccatttctggtgtatctttggtggcagcagtcatgtccatttggtatat |
3102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 423
Target Start/End: Complemental strand, 2744 - 2589
Alignment:
| Q |
268 |
cagttactctgcaattgcttgggctggtagtgtacacaagggagtacaagcaaatgtagaatatactagcaaagccacgactagtgcaggatctgtcttt |
367 |
Q |
| |
|
|||||||||| | ||||||||| ||| ||| ||||||||||||| || ||||||| |||||| ||| || || ||||| |||| ||| |||||| |
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| T |
2744 |
cagttactctactattgcttggactgccggtgcacacaagggagtaatagaaaatgtacaatatagtagaaacgctacgacggccgcagaatcagtcttt |
2645 |
T |
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| Q |
368 |
aatttctttaatgcacttggttctgttgcttttgcctatgcaggtcacaatgtggt |
423 |
Q |
| |
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|||||||||||||||||||| ||| | || ||||||||||| || ||||||||||| |
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| T |
2644 |
aatttctttaatgcacttggctctatcgcgtttgcctatgccggacacaatgtggt |
2589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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