View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20744_low_5 (Length: 444)
Name: NF20744_low_5
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20744_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Complemental strand, 8756098 - 8755686
Alignment:
| Q |
13 |
aaaattatgtcactatgctaatgactaacataacaataaaattcacttgaaaaacatgacaataaaattattggaagaatccgtgcctagcctctcgtat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8756098 |
aaaattatgtcactatgctaatgactaacataacaataaaattcacttgaaaaatatgacaataaaattattggaagaatccgtgcctagcctctcgtat |
8755999 |
T |
|
| Q |
113 |
tccaaaatatatatattcaaagaatcatcaaaatacaaacttattcgaagagtaataaaaccgttcttattttttcttaacagctacaattaatagtgaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8755998 |
tccaaaatatatatattcaaagaatcatcaaaatacaaacttattcgaagagtaataaaaccgttcttattttttcttaacagctacaatta-tagtgaa |
8755900 |
T |
|
| Q |
213 |
ataaaaacaaataccgtaaatatatctcttgctctcaagtatacatagatcaaatcgtaatatcatcactctataccgtatatattgtttgatgtacata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8755899 |
ataaaaacaaataccgtaaatatatctcttgctctcaaatatacatagatcaaatcgtaatatcatcactctataccgtatatattgtttgatgtacata |
8755800 |
T |
|
| Q |
313 |
aaattcttatgacaagtacaagtcaatattgtttcacgaaatccacatgaaaaaagtggaaccatcttgttcttaattagttcttgaagatggcgagcat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8755799 |
aaattcttatgacaagtacaagtcaatattgtttcacgaaatccacatgaaaaaagtggaaccatcttgttcttaattagttcttgaagatggcgagcat |
8755700 |
T |
|
| Q |
413 |
agacaaaataatcg |
426 |
Q |
| |
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|||||||||||||| |
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| T |
8755699 |
agacaaaataatcg |
8755686 |
T |
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