View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20744_low_7 (Length: 404)
Name: NF20744_low_7
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20744_low_7 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: scaffold0121 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 404
Target Start/End: Original strand, 1496 - 1880
Alignment:
| Q |
20 |
ggcaaataatcaacaaccctaaaccccaaattcgcttgttcatccaaagacaaaaagatacaacctttcaaactccaatccgccggagttcttgaatcac |
119 |
Q |
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| T |
1496 |
ggcaaataatcaacaaccctaaaccccaaattcgcttgttcatccaaagacaaaaagatacaacctttcaaactccaatccgccggagttcttgaatcac |
1595 |
T |
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| Q |
120 |
caatcgccacaacctgccaacccttcaccttcaccaatttcttcaactcatcactcgggtaacccgaaaccgaaaccacgatccatttctccgataagaa |
219 |
Q |
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| T |
1596 |
caatcgccacaacctgccaacccttcaccttcaccaatttcttcaactcatcactcgggtaacccgaaaccgaaaccacgatccatttctccgataagaa |
1695 |
T |
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| Q |
220 |
attcgcgtaccgcgaatttctatcggcgattggtgtgattttgttccaatcgacgcgtggatactcgatcttctcgagatcacgcgctttgttctcgaaa |
319 |
Q |
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| T |
1696 |
attcgcgtaccgcgaatttctatcggcgattggtgttatcttgttccaatcgacgcgtggatactcgatcttctcgagatcacgcgctttgttctcgaaa |
1795 |
T |
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| Q |
320 |
caaagtaaagcggcggtgtcgccgacgttacgtaagaagaaaagtgctgcgacggttacgacgagaagaatgacggaaacaattt |
404 |
Q |
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| T |
1796 |
caaagtaaagcggcggtgtcgccgacgttacgtaagaagaaaagtgctgcgacggttacgacgagaagaatgacggaaacaattt |
1880 |
T |
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