View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20745_high_1 (Length: 564)

Name: NF20745_high_1
Description: NF20745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20745_high_1
NF20745_high_1
[»] chr8 (7 HSPs)
chr8 (17-212)||(8452299-8452489)
chr8 (446-553)||(8452139-8452246)
chr8 (429-552)||(479146-479269)
chr8 (429-552)||(7126195-7126318)
chr8 (429-552)||(40589789-40589912)
chr8 (429-552)||(43319104-43319227)
chr8 (402-430)||(8452249-8452277)
[»] chr1 (3 HSPs)
chr1 (250-394)||(3822760-3822904)
chr1 (449-541)||(5608313-5608405)
chr1 (359-392)||(2191281-2191314)
[»] chr5 (7 HSPs)
chr5 (253-394)||(15362608-15362749)
chr5 (245-337)||(34573180-34573272)
chr5 (254-391)||(36059391-36059528)
chr5 (449-547)||(8387073-8387171)
chr5 (449-550)||(20203952-20204053)
chr5 (250-394)||(30008091-30008235)
chr5 (250-337)||(29966563-29966650)
[»] chr4 (9 HSPs)
chr4 (429-547)||(56062974-56063092)
chr4 (429-552)||(49950295-49950418)
chr4 (449-552)||(55734002-55734105)
chr4 (432-552)||(2063747-2063867)
chr4 (449-549)||(28538879-28538979)
chr4 (449-552)||(26423254-26423357)
chr4 (434-552)||(28425172-28425290)
chr4 (244-333)||(50501950-50502039)
chr4 (429-547)||(51260626-51260741)
[»] chr2 (3 HSPs)
chr2 (244-337)||(4051541-4051634)
chr2 (429-552)||(39829019-39829142)
chr2 (433-552)||(87333-87452)
[»] chr7 (2 HSPs)
chr7 (449-552)||(16096331-16096434)
chr7 (429-538)||(3746221-3746327)
[»] chr3 (2 HSPs)
chr3 (245-337)||(2138432-2138524)
chr3 (250-341)||(35239561-35239652)
[»] chr6 (3 HSPs)
chr6 (429-552)||(19365029-19365150)
chr6 (429-551)||(11732738-11732860)
chr6 (521-553)||(15607092-15607124)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 5e-82; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 8452489 - 8452299
Alignment:
Q  17 attaattatatcacgagtttttcgatcaacaatttaagatcacggatctcagcaaacttaaattctttcttggcttggaggtagccaaatccaagtttgg 116  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8452489 attaattatatcacgagtttttcgatcaacaatttaagatcaaggatctcagcaaacttaaattctttcttggcttggaggtagccaaatccaagtttgg 8452390  T
Q  117 aattgttctatctcaacacaaacatgccttggaattaatcacaagtttggaattaattcacttaattttttatgttagttggtttgatataaaacc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||| | | |||   |||||||||||||||||||||||||||||||    
T  8452389 aattgttctatctcaacacaaacatgccttggaattaatcacaagttt--aattcagttact---ttttttatgttagttggtttgatataaaacc 8452299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 446 - 553
Target Start/End: Complemental strand, 8452246 - 8452139
Alignment:
Q  446 cgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaatgatccatgggtttgag 545  Q
    |||||||||| |||||| |||| |||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||    
T  8452246 cgtagtatttagaattcgtgtcagttactattatattgatgtaggtggacaattggatatgggcagcaggttagtgtgatgaatgattcatggattcgag 8452147  T
Q  546 gtgttcat 553  Q
    ||||||||    
T  8452146 gtgttcat 8452139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 429 - 552
Target Start/End: Complemental strand, 479269 - 479146
Alignment:
Q  429 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaa 528  Q
    ||||||||||||| || || |||||||||| ||| |||| | |||| ||| |||  | |||||||||||||||||||||||||||||| || || || ||    
T  479269 acccgagctttgcttggcggagtatttggacttcgtgtcagctacttttacatggttctaggtggacaattggacatgggcagcaggtcagcgttataaa 479170  T
Q  529 tgatccatgggtttgaggtgttca 552  Q
    ||||||||||||| ||||||||||    
T  479169 tgatccatgggttcgaggtgttca 479146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 429 - 552
Target Start/End: Original strand, 7126195 - 7126318
Alignment:
Q  429 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaa 528  Q
    ||||||||||||| || || ||||||||||||||  | |  ||||| ||||||| |||||| ||||| ||||||| |||||| || || |||||||||||    
T  7126195 acccgagctttgcttggcgaagtatttggaattcgcgacatttacttttatatgggtgtagatggacgattggacgtgggcaacatgtcagtgtgatgaa 7126294  T
Q  529 tgatccatgggtttgaggtgttca 552  Q
    |||||| |||||| ||||||||||    
T  7126295 tgatccgtgggttcgaggtgttca 7126318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 429 - 552
Target Start/End: Complemental strand, 40589912 - 40589789
Alignment:
Q  429 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaa 528  Q
    ||||||||||||| || || |||||||||||||   ||| | |||| ||| |||  |||||||||||||| ||| ||||||||||||| || ||||||||    
T  40589912 acccgagctttgcttggcggagtatttggaatttgcgtcagatacttttacatggatgtaggtggacaataggaaatgggcagcaggtcagcgtgatgaa 40589813  T
Q  529 tgatccatgggtttgaggtgttca 552  Q
    ||| ||||||||| ||||||||||    
T  40589812 tgacccatgggttcgaggtgttca 40589789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 429 - 552
Target Start/End: Complemental strand, 43319227 - 43319104
Alignment:
Q  429 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaa 528  Q
    ||||||||||||| || || |||||||||| |||  ||| | |||| ||| |||  | |||||||||||||||||||||| |||| || || || |||||    
T  43319227 acccgagctttgcttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggacatgggaagcatgtcagcgttatgaa 43319128  T
Q  529 tgatccatgggtttgaggtgttca 552  Q
    ||||||||||||| ||||||||||    
T  43319127 tgatccatgggttcgaggtgttca 43319104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 430
Target Start/End: Complemental strand, 8452277 - 8452249
Alignment:
Q  402 tacccaattgataaaaacaattcaggtac 430  Q
    |||||||||||||||||||||||||||||    
T  8452277 tacccaattgataaaaacaattcaggtac 8452249  T

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Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 250 - 394
Target Start/End: Original strand, 3822760 - 3822904
Alignment:
Q  250 atgtttgtgcaagcggttaatttatcacttcagcggcaaatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacggtgagaagtgcc 349  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||  || | ||| |||||||||||  || ||||||||||||||||||||  |    
T  3822760 atgtttgtgcaagcggttaatttatcacttcagcggcaaaaacccacgtttgagtaaaagttagcttttcaaatttttttaaatcacggtgagaagtatc 3822859  T
Q  350 taggtaagcgcaaaaggtgttccagccgtgattccaaacacacca 394  Q
    || | ||||||||||| |||||  ||| |||||||||||||||||    
T  3822860 taaggaagcgcaaaagatgttctggccatgattccaaacacacca 3822904  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 541
Target Start/End: Original strand, 5608313 - 5608405
Alignment:
Q  449 agtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaatgatccatgggtt 541  Q
    ||||||||||||||  ||| | |||| ||| |||  |||||||||||| ||||| ||||||||||||| || ||||||||||| |||||||||    
T  5608313 agtatttggaattcgcgtcagatacttttacatggatgtaggtggacagttggaaatgggcagcaggtcagcgtgatgaatgacccatgggtt 5608405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 392
Target Start/End: Original strand, 2191281 - 2191314
Alignment:
Q  359 gcaaaaggtgttccagccgtgattccaaacacac 392  Q
    ||||||||||||||||||||||||||||||||||    
T  2191281 gcaaaaggtgttccagccgtgattccaaacacac 2191314  T

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Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 253 - 394
Target Start/End: Original strand, 15362608 - 15362749
Alignment:
Q  253 tttgtgcaagcggttaatttatcacttcagcggcaaatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacggtgagaagtgcctag 352  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||||  ||||||||||| ||||| |||||||||||||||||| | | || ||||| |    
T  15362608 tttgtgcaagcggttgatttatcaattcagcggcaaaaacccacgtttgaggagaagctaccttttgaagcttctttaaatcacgttaaaaattgcctcg 15362707  T
Q  353 gtaagcgcaaaaggtgttccagccgtgattccaaacacacca 394  Q
    | | | | ||||||||||   ||||||| |||||||||||||    
T  15362708 ggacgtggaaaaggtgttttggccgtgaatccaaacacacca 15362749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 245 - 337
Target Start/End: Complemental strand, 34573272 - 34573180
Alignment:
Q  245 ataggatgtttgtgcaagcggttaatttatcacttcagcggcaaatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacg 337  Q
    |||| |||||||||||||||||| |||||| | |||||||||||| |||||||||  ||||||||||| ||||| ||||||||||||||||||    
T  34573272 atagcatgtttgtgcaagcggttgatttattaattcagcggcaaaaacccacgtttgaggagaagctatcttttgaagcttctttaaatcacg 34573180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 254 - 391
Target Start/End: Complemental strand, 36059528 - 36059391
Alignment:
Q  254 ttgtgcaagcggttaatttatcacttcagcggcaaatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacggtgagaagtgcctagg 353  Q
    |||||||||||| | ||||||||||| ||| ||||| | |||||||| |||| |||||| |||||  ||||||||||||||| |||||||| ||||| ||    
T  36059528 ttgtgcaagcggatgatttatcacttgagcagcaaaaagccacgttggaggaaaagctaccttttggagcttctttaaatcatggtgagaaatgcctcgg 36059429  T
Q  354 taagcgcaaaaggtgttccagccgtgattccaaacaca 391  Q
     | | |||||||||||||  | ||||| ||||||||||    
T  36059428 gacgtgcaaaaggtgttcatgtcgtgaatccaaacaca 36059391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 449 - 547
Target Start/End: Original strand, 8387073 - 8387171
Alignment:
Q  449 agtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaatgatccatgggtttgaggt 547  Q
    ||||||||||||||  |||  ||||| |||||||  ||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||| |||||    
T  8387073 agtatttggaattcgcgtcaattacttttatatggatgtagatgcacaattggaaatgggcagcaggtcagtgtgatgaatgatccatgggttcgaggt 8387171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 449 - 550
Target Start/End: Original strand, 20203952 - 20204053
Alignment:
Q  449 agtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaatgatccatgggtttgaggtg 548  Q
    ||||||||||||||  ||| |||||| ||||| |  |||||||||||| ||||| ||||||||||  | || ||||||||||||||||||||| ||||||    
T  20203952 agtatttggaattcgcgtcagttacttttatacggatgtaggtggacatttggaaatgggcagcaaatcagcgtgatgaatgatccatgggttagaggtg 20204051  T
Q  549 tt 550  Q
    ||    
T  20204052 tt 20204053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 394
Target Start/End: Complemental strand, 30008235 - 30008091
Alignment:
Q  250 atgtttgtgcaagcggttaatttatcacttcagcggcaaatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacggtgagaagtgcc 349  Q
    |||||||||||||||||| |||||||| ||||| |  ||| |||||||||  | ||||||||| ||||| |||||||||||||||||| | | || | ||    
T  30008235 atgtttgtgcaagcggttgatttatcaattcagtgataaaaacccacgtttgaagagaagctaccttttgaagcttctttaaatcacgttaaaaattacc 30008136  T
Q  350 taggtaagcgcaaaaggtgttccagccgtgattccaaacacacca 394  Q
    | || | | | ||||||||||   ||||||| |||||||||||||    
T  30008135 tcgggacgtggaaaaggtgttttggccgtgaatccaaacacacca 30008091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 29966563 - 29966650
Alignment:
Q  250 atgtttgtgcaagcggttaatttatcacttcagcggcaaatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacg 337  Q
    |||||||||||||||||| |||||||| ||||| |  ||| |||||||||  | ||||||||| ||||| ||||||||||||||||||    
T  29966563 atgtttgtgcaagcggttgatttatcaattcagtgataaaaacccacgtttgaagagaagctaccttttgaagcttctttaaatcacg 29966650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 429 - 547
Target Start/End: Original strand, 56062974 - 56063092
Alignment:
Q  429 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaa 528  Q
    ||||||||||||| ||| | ||||||||||||||  ||| |||||| |||||||  ||||| |||||||||| | ||||||||||||| || ||||||||    
T  56062974 acccgagctttgcttgaaggagtatttggaattcgcgtcagttacttttatatggatgtagatggacaattgaaaatgggcagcaggtcagcgtgatgaa 56063073  T
Q  529 tgatccatgggtttgaggt 547  Q
    ||||||||||||| |||||    
T  56063074 tgatccatgggttcgaggt 56063092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 429 - 552
Target Start/End: Original strand, 49950295 - 49950418
Alignment:
Q  429 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaa 528  Q
    ||||||||||||| ||||| ||||||||||||||  ||   ||||| ||| || | |||||||||||||||||| ||||| |||| || |  ||||||||    
T  49950295 acccgagctttgcttgacggagtatttggaattcgcgtgaattacttttacataaatgtaggtggacaattggaaatgggtagcatgtcaacgtgatgaa 49950394  T
Q  529 tgatccatgggtttgaggtgttca 552  Q
    ||||||||||||| ||||||||||    
T  49950395 tgatccatgggttcgaggtgttca 49950418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 449 - 552
Target Start/End: Original strand, 55734002 - 55734105
Alignment:
Q  449 agtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaatgatccatgggtttgaggtg 548  Q
    ||||||||||||||  ||| ||| || |||||||  |||||||||||| ||||| ||||||||||||| || ||||||||||||||||||||  ||||||    
T  55734002 agtatttggaattcacgtcagttgcttttatatggatgtaggtggacagttggaaatgggcagcaggtcagcgtgatgaatgatccatgggtacgaggtg 55734101  T
Q  549 ttca 552  Q
    ||||    
T  55734102 ttca 55734105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 432 - 552
Target Start/End: Original strand, 2063747 - 2063867
Alignment:
Q  432 cgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaatga 531  Q
    |||||||||| ||| | ||||||||||||||  ||| | |||| |||||||  ||||||| |||||||| | |||||||||| || || ||||| |||||    
T  2063747 cgagctttgcttgatggagtatttggaattcacgtcagctacttttatatggatgtaggtagacaattgaaaatgggcagcatgtcagcgtgataaatga 2063846  T
Q  532 tccatgggtttgaggtgttca 552  Q
    |||||||||| ||||||||||    
T  2063847 tccatgggttcgaggtgttca 2063867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 449 - 549
Target Start/End: Complemental strand, 28538979 - 28538879
Alignment:
Q  449 agtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaatgatccatgggtttgaggtg 548  Q
    ||||||||||||||   || |||||| |||||||  ||||| |||||| ||||| ||||||||||||| || ||||||||||||||||||||| ||||||    
T  28538979 agtatttggaattcacatcagttacttttatatggatgtagatggacagttggaaatgggcagcaggtcagcgtgatgaatgatccatgggttcgaggtg 28538880  T
Q  549 t 549  Q
    |    
T  28538879 t 28538879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 449 - 552
Target Start/End: Complemental strand, 26423357 - 26423254
Alignment:
Q  449 agtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaatgatccatgggtttgaggtg 548  Q
    ||||||||||||||  ||| |||||| |||||||  ||||| ||||| |||||| ||||||| || || ||||||||||||||||| || ||| ||||||    
T  26423357 agtatttggaattcgcgtcagttacttttatatggttgtagatggacgattggagatgggcaacatgtcagtgtgatgaatgatccgtgagttcgaggtg 26423258  T
Q  549 ttca 552  Q
    ||||    
T  26423257 ttca 26423254  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 434 - 552
Target Start/End: Original strand, 28425172 - 28425290
Alignment:
Q  434 agctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaatgatc 533  Q
    |||||||| || || ||||||||||||||  ||| |||||| ||||||   ||||| ||||| |||||| ||||||| |||||||   ||||||||||||    
T  28425172 agctttgcttggcggagtatttggaattcgcgtcagttacttttatatagttgtagatggacgattggagatgggcaacaggttaacttgatgaatgatc 28425271  T
Q  534 catgggtttgaggtgttca 552  Q
    | |||||| ||||||||||    
T  28425272 cgtgggttcgaggtgttca 28425290  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 333
Target Start/End: Complemental strand, 50502039 - 50501950
Alignment:
Q  244 tataggatgtttgtgcaagcggttaatttatcacttcagcggcaaatacccacgttgaaggagaagctagcttttcaagcttctttaaat 333  Q
    ||||| |||||||||||||||||| |||||| | |||||| | ||| |||||||||  |||| || ||| ||||| ||||||||||||||    
T  50502039 tatagtatgtttgtgcaagcggttgatttattaattcagcagtaaaaacccacgtttgaggaaaaactaccttttgaagcttctttaaat 50501950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 547
Target Start/End: Complemental strand, 51260741 - 51260626
Alignment:
Q  429 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaa 528  Q
    ||||||||||||| ||  | ||||||||||||||  ||  |||||| |||||||  ||||| |||||||||||| ||||   |||| |  | ||||||||    
T  51260741 acccgagctttgcttggaggagtatttggaattcgcgtaagttacttttatatggatgtagatggacaattggaaatgg---gcagatcggcgtgatgaa 51260645  T
Q  529 tgatccatgggtttgaggt 547  Q
    ||||||||||||| |||||    
T  51260644 tgatccatgggttcgaggt 51260626  T

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Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 244 - 337
Target Start/End: Complemental strand, 4051634 - 4051541
Alignment:
Q  244 tataggatgtttgtgcaagcggttaatttatcacttcagcggcaaatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacg 337  Q
    ||||| |||||||||||||||||| |||||||| |||||| ||||| |||||||||  ||||||||||| ||||| ||||||||||||||||||    
T  4051634 tatagcatgtttgtgcaagcggttgatttatcaattcagctgcaaaaacccacgtttgaggagaagctaccttttgaagcttctttaaatcacg 4051541  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 429 - 552
Target Start/End: Complemental strand, 39829142 - 39829019
Alignment:
Q  429 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaa 528  Q
    |||| |||||||| || || |||||||||||||| |||| |||||| |||||||  ||||| ||||| |||||| ||||||| ||||| || ||||||||    
T  39829142 acccaagctttgcttggcggagtatttggaattcgtgtcagttacttttatatggttgtagatggacgattggagatgggcaacaggtcagcgtgatgaa 39829043  T
Q  529 tgatccatgggtttgaggtgttca 552  Q
    |||||| |||||| ||||||||||    
T  39829042 tgatccgtgggttcgaggtgttca 39829019  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 433 - 552
Target Start/End: Original strand, 87333 - 87452
Alignment:
Q  433 gagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaatgat 532  Q
    ||||||||| || || ||||| ||||||||  ||| | |||| ||| |||  |||||||| ||| ||||| |||||||||||||||| ||||||||||||    
T  87333 gagctttgcttggcggagtatatggaattcgcgtcagatacttttacatggatgtaggtgaacagttggaaatgggcagcaggttagcgtgatgaatgat 87432  T
Q  533 ccatgggtttgaggtgttca 552  Q
    ||||||||| ||||||||||    
T  87433 ccatgggttcgaggtgttca 87452  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 449 - 552
Target Start/End: Original strand, 16096331 - 16096434
Alignment:
Q  449 agtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaatgatccatgggtttgaggtg 548  Q
    |||||||||||||| || | |||||| |||||||  |||||||||||||||||| ||||  ||||||| || |||||||| |||||||||||| ||||||    
T  16096331 agtatttggaattcgtgccagttactgttatatggatgtaggtggacaattggaaatggatagcaggtcagcgtgatgaaagatccatgggttcgaggtg 16096430  T
Q  549 ttca 552  Q
    ||||    
T  16096431 ttca 16096434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 538
Target Start/End: Original strand, 3746221 - 3746327
Alignment:
Q  429 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaa 528  Q
    |||| |||||||| || || ||||||||||||||  ||| |||||| ||||||   |||||||||||||||||||||||    || || || ||||||||    
T  3746221 accctagctttgcttggcggagtatttggaattcgcgtcagttacttttatattgttgtaggtggacaattggacatgg---tcatgtcagcgtgatgaa 3746317  T
Q  529 tgatccatgg 538  Q
    ||||||||||    
T  3746318 tgatccatgg 3746327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 245 - 337
Target Start/End: Complemental strand, 2138524 - 2138432
Alignment:
Q  245 ataggatgtttgtgcaagcggttaatttatcacttcagcggcaaatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacg 337  Q
    |||| ||||||||| |||||||| |||||||| |||||||||||| || ||||||  ||||||||||| ||||| || |||||||||||||||    
T  2138524 atagcatgtttgtgtaagcggtttatttatcaattcagcggcaaaaactcacgtttgaggagaagctatcttttgaaacttctttaaatcacg 2138432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 341
Target Start/End: Original strand, 35239561 - 35239652
Alignment:
Q  250 atgtttgtgcaagcggttaatttatcacttcagcggcaaatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacggtga 341  Q
    |||||||| ||||||||  | ||||||||| |||||| || |||  ||||| |||||||| || ||||| ||||||||||||||||||||||    
T  35239561 atgtttgttcaagcggtggaattatcactttagcggccaaaacctgcgttggaggagaagttaccttttaaagcttctttaaatcacggtga 35239652  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 552
Target Start/End: Complemental strand, 19365150 - 19365029
Alignment:
Q  429 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaa 528  Q
    |||||||||||||||| || |  |||||||||||  ||  |||||| |||||||    |||||||||| ||||| ||  |||||| || |||||||||||    
T  19365150 acccgagctttgcctggcgaa--atttggaattcgcgttggttacttttatatggaattaggtggacagttggaaatttgcagcatgtcagtgtgatgaa 19365053  T
Q  529 tgatccatgggtttgaggtgttca 552  Q
    |||||||| |||| ||||||||||    
T  19365052 tgatccattggttcgaggtgttca 19365029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 551
Target Start/End: Complemental strand, 11732860 - 11732738
Alignment:
Q  429 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatgaa 528  Q
    ||||||||||| ||||  | ||||||||||||||  ||| |||| | ||| |||  |||||||||| |||| || |||||||||| ||  | ||||||||    
T  11732860 acccgagcttttcctggtggagtatttggaattcgcgtcagttagttttacatggatgtaggtggataattagaaatgggcagcatgtcggcgtgatgaa 11732761  T
Q  529 tgatccatgggtttgaggtgttc 551  Q
    ||||  ||||||| |||||||||    
T  11732760 tgattaatgggttcgaggtgttc 11732738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 553
Target Start/End: Complemental strand, 15607124 - 15607092
Alignment:
Q  521 gtgatgaatgatccatgggtttgaggtgttcat 553  Q
    ||||||||||||||||||||| |||||||||||    
T  15607124 gtgatgaatgatccatgggttcgaggtgttcat 15607092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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