View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20745_high_11 (Length: 241)
Name: NF20745_high_11
Description: NF20745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20745_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 25361835 - 25361652
Alignment:
| Q |
40 |
caaataatcgactccatgcacgtagtactactaagaagacggaagaattagagcaagaagtgcgtgctgatgtagagcctctggatcgagatattttagc |
139 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25361835 |
caaataatcgactccatgcacgcagtacttctaagaagacggaaggattagagcaagaagtgcgtgctgatgtagagcctctggatcgagatattttagc |
25361736 |
T |
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| Q |
140 |
tacaaacacatttgctgagccaatttctacgatgaaacttgtaccaacaactgcggatcctgtaccatctgatgtgagcctgtt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25361735 |
tacaaacacatttgctgagccaatttctacgatgaaacttgtaccaacaactacggatcctgtaccatctgatgtgagcctgtt |
25361652 |
T |
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