View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20745_high_3 (Length: 491)
Name: NF20745_high_3
Description: NF20745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20745_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Complemental strand, 38189763 - 38189299
Alignment:
| Q |
18 |
caatttactatcagaaaaggaataggcatttctatgcaaacacctgcatctgtttctaaatataagtactgtttctcagtttctacaaaattaggaagca |
117 |
Q |
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| T |
38189763 |
caatttactatcagaaaaggaataggcatttctatgcaaacacctgcatctgtttctaaatataagtactgtttctcagtttctgcaaaattaggaagca |
38189664 |
T |
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| Q |
118 |
acaattatcttgttgatggaagtttcaagacatttataatattgatgaaagaaaaatgatatatttgatactaaatggagtttcattttgataagtagtt |
217 |
Q |
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| T |
38189663 |
acaattatcttgttgatggaagtttcaagacatttataatattgatgaaagaaaaatgatatatttgatactaaatggagtttcattttgataagtagtt |
38189564 |
T |
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| Q |
218 |
cgctcattaaattcatccttgtactagtgacttgtaaatgtaatttgcttcttatcatatataaatattgttttcttagcttcatgttgattgttttcgg |
317 |
Q |
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| T |
38189563 |
tgctcattaaattcatccttgtactagtgacttgtaaatgtaatttgcttcttatcatatagaaatattgttttcttagcttcatgttgattgttttcgg |
38189464 |
T |
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| Q |
318 |
taaacaaaagaattttctaaagaaatgagactaaacttcattgcaagttgtactaaagaatagccaaatgaaaagtatatatacaagttagatgaacatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38189463 |
taaacaaaagaattttctaaagaaatgagactaaacttcattgcaagttgtactaaagaatagccaaatgaaaagtatatatacaagttagatgaacatg |
38189364 |
T |
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| Q |
418 |
ataaccacacagcgcggcaccaaaacagacgcaccaaaaacaccggcccgtttcatgagtattat |
482 |
Q |
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| T |
38189363 |
ataaccacacagcgcagcaccaaaacagacgcaccaaaaacaccggcccgtttcatgaatattat |
38189299 |
T |
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