View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20745_low_10 (Length: 243)
Name: NF20745_low_10
Description: NF20745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20745_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 49065298 - 49065078
Alignment:
| Q |
18 |
cttgtgaactgaagaattttctcttgcagtagttgcaagtgaaaaaacgtggctctgaagttgattcagagccacaagtgaaattttctgaggatgtttt |
117 |
Q |
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| T |
49065298 |
cttgtgaactgaagaattttctcttgcagtagttgcaagtgaaaaaacgtggctctgaagttgattcagagccacaagtgaaattttctgaggatgtttt |
49065199 |
T |
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| Q |
118 |
agaagaattatctatgtccaaacatgtaactaaatttgactttgaattgcacccaagatcacaatcattgttaggaacattcagatcaaatgaagtatct |
217 |
Q |
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| T |
49065198 |
agaagaattatctatgtccaaacatgtaactaaatttgacattgaattgcacccaagatcacaatcattgttaggaacattcagatcaaatgaagtatct |
49065099 |
T |
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| Q |
218 |
acctttgcctcctttgcttct |
238 |
Q |
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| T |
49065098 |
acctttgcctccttttcttct |
49065078 |
T |
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