View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20745_low_4 (Length: 387)
Name: NF20745_low_4
Description: NF20745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20745_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 21428410 - 21428768
Alignment:
| Q |
10 |
ataatactgatgtttcaaattagcttagcacctcccttactccc-aaacaagaaaaaacagtgaagaaaaaggaagattagaagaataaatacatgtcct |
108 |
Q |
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| T |
21428410 |
ataatattgatgtttcaaattagcttagcacctcccttactccccaaacaagaaaaaacagtgaagaaaaaggaagattagaagaataaatacatgtcct |
21428509 |
T |
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| Q |
109 |
aattcaacttttcaaataacaaataggacttatgctattttggctaaaagtaacattaaagaccaagaagaaaactaatcgttaaattagttgttcaaag |
208 |
Q |
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| T |
21428510 |
aattcaacttttcaaataacaaataggacttatgctattttggctaaaagtaacattaaagaccaagaagaaaagtaatcgttaaattagttgttcaaag |
21428609 |
T |
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| Q |
209 |
aatgattgaataaatgatcaagtaatttcaataacnnnnnnnnnnnnnnnnattattgtgagtaatcattgcaatcaagcacaatatctccaaaaaattc |
308 |
Q |
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| T |
21428610 |
attgattgaataaatgatcaagtaatttcaataac---tttttttttttttattattgtgagtaatcattgcaatcaagcacaatatctccaaaaaattc |
21428706 |
T |
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| Q |
309 |
tgaccaacatcattaacccactaaccatataacaacatgaaaaaatgtaaaaacctaccacc |
370 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21428707 |
tgaccaacatcattaaccaactaaccatataacaacatgaaaaaatgtaaaaacctaccacc |
21428768 |
T |
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