View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20745_low_6 (Length: 311)
Name: NF20745_low_6
Description: NF20745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20745_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 17514983 - 17515262
Alignment:
| Q |
13 |
aatatgaaaggaatatcatgtaatcaatatgaaatatttggttgagtttatactattcaacaagaaagaacgttaatgcgctacattgttttccaaattc |
112 |
Q |
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| T |
17514983 |
aatatgaaaggaatatcatgtaatcaatatgaaatatttggttgagtttatactattcaacaagaaagaacgttaatgcgctgcattgttttccaaattc |
17515082 |
T |
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| Q |
113 |
aattcccatcaaatttcaccaaacctaatgtacataaacattgctttacaaatatacacttatttcaagttctctgactcactctaaaggacaaatattc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17515083 |
aattcccatcaaatttcaccaaacctaatgtacataaatattgctttacaaatatacacttatttcaagttctctgactcactctaaaggacaaatattc |
17515182 |
T |
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| Q |
213 |
ctcaattataggatacctaataccagacatatattcaaactctctacatatacgttaatcattttataccaagaaacacg |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17515183 |
ctcaattataggatacctaataccagacatatattcaaactctctacatatacgttaatcattttataccaagaaacacg |
17515262 |
T |
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