View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20745_low_9 (Length: 245)
Name: NF20745_low_9
Description: NF20745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20745_low_9 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 245
Target Start/End: Original strand, 45178745 - 45178968
Alignment:
| Q |
22 |
aagcactaatacttgcattatctttacctattgtattgaatacttgtctgatactgatactaatttgttaagtacctgcatcaatttcttttttctatct |
121 |
Q |
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| T |
45178745 |
aagcactaatacttgcattatctttacctattgtattgaatacttgtttgatactgatactaatttgttaagtacctgcatcaatttcttttttctatct |
45178844 |
T |
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| Q |
122 |
aaagtccatttcaacatacaaatctgatcaatgcctgaggcgatttgtacgcatgatatttttcatctccaggtcgttgcatattagcttcaaaagtttg |
221 |
Q |
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| T |
45178845 |
aaagtccatttcaacatacaaatctgatcaatgcctgaggcgatttgtacgcatgatatttttcatctccaggtcgttgcatattagctttaaaaatttg |
45178944 |
T |
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| Q |
222 |
ctgcatatttttcttctaattgct |
245 |
Q |
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| T |
45178945 |
ctgcatatttttcttctaattgct |
45178968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 45169233 - 45169284
Alignment:
| Q |
182 |
tttcatctccaggtcgttgcatattagcttcaaaagtttgctgcatatttttc |
234 |
Q |
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| T |
45169233 |
tttcatcttcaggtcgttgcctattagctt-aaaaatttgctgcatatttttc |
45169284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 45172007 - 45172133
Alignment:
| Q |
112 |
ttttctatctaaagtccatttcaacatacaaatctgatcaatgcctgaggcgatttgtacgcatgatatttttcatctccaggtcgttgcatattagc-t |
210 |
Q |
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| T |
45172007 |
ttttttatccaaagtccatttcaacatacaattttgttctctgcctaagactatttatatgcatga-cttttccatctacaggtcgttaaatattagctt |
45172105 |
T |
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| Q |
211 |
tcaaaagtttgctgcatatttttcttct |
238 |
Q |
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| T |
45172106 |
taaaaaaattgctgcatatttttcttct |
45172133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 24123763 - 24123723
Alignment:
| Q |
19 |
atgaagcactaatacttgcattatctttacctattgtattg |
59 |
Q |
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| T |
24123763 |
atgaagcactaatatttgcattgtcttcacctattgtattg |
24123723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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