View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20746_low_2 (Length: 264)

Name: NF20746_low_2
Description: NF20746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20746_low_2
NF20746_low_2
[»] chr3 (3 HSPs)
chr3 (29-202)||(18372102-18372276)
chr3 (1-83)||(3954129-3954211)
chr3 (104-158)||(3954750-3954805)
[»] chr4 (18 HSPs)
chr4 (1-104)||(13459945-13460048)
chr4 (1-99)||(48208966-48209064)
chr4 (27-99)||(9578945-9579017)
chr4 (27-99)||(9584640-9584712)
chr4 (27-99)||(35464832-35464904)
chr4 (4-99)||(10978623-10978718)
chr4 (27-83)||(10428463-10428519)
chr4 (29-83)||(35779642-35779695)
chr4 (1-83)||(47128726-47128808)
chr4 (104-157)||(9579365-9579419)
chr4 (104-157)||(9585060-9585114)
chr4 (104-158)||(10978233-10978288)
chr4 (104-158)||(34769447-34769502)
chr4 (1-83)||(23510082-23510164)
chr4 (104-158)||(47128097-47128152)
chr4 (104-158)||(17679335-17679390)
chr4 (104-157)||(48208566-48208621)
chr4 (120-158)||(13459904-13459942)
[»] chr8 (5 HSPs)
chr8 (31-99)||(13535000-13535068)
chr8 (31-99)||(13624540-13624608)
chr8 (27-81)||(41878917-41878971)
chr8 (27-83)||(45475571-45475627)
chr8 (120-158)||(41878285-41878323)
[»] chr1 (4 HSPs)
chr1 (27-99)||(4978708-4978780)
chr1 (30-83)||(4971913-4971966)
chr1 (104-158)||(5315872-5315927)
chr1 (112-158)||(50880666-50880712)
[»] chr5 (5 HSPs)
chr5 (27-83)||(16592381-16592437)
chr5 (27-83)||(22986854-22986910)
chr5 (27-83)||(30854067-30854124)
chr5 (115-158)||(16592748-16592791)
chr5 (112-158)||(30853383-30853429)
[»] chr6 (1 HSPs)
chr6 (1-83)||(19737976-19738058)
[»] chr2 (4 HSPs)
chr2 (104-158)||(34693260-34693315)
chr2 (104-158)||(34715672-34715727)
chr2 (115-198)||(40636036-40636119)
chr2 (112-158)||(5952854-5952900)


Alignment Details
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 18372276 - 18372102
Alignment:
Q  29 gcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatatacaacgagtttaggcgatgagaaatcggt-atgagagtgaggaaac 127  Q
    ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  18372276 gcagccctgtttaaattaaaaatgaagtctgtaaacctaagaaataaataatataaaacgagtttaggcgatgagaaatcggtgatgagagcgaggaaac 18372177  T
Q  128 gtgtttcaacttttgtgagggaatgaaataannnnnnnnnatcgaaggatttatattatactgagtataaatttt 202  Q
    |  ||||||||||||||||||||||||||||         || | ||||| ||||||||||||||||||| ||||    
T  18372176 gcatttcaacttttgtgagggaatgaaataatttttttttattggaggatatatattatactgagtataattttt 18372102  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 3954129 - 3954211
Alignment:
Q  1 aagcagtcacaacaacagcnnnnnnntcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatata 83  Q
    ||||||||||||||||| |       |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3954129 aagcagtcacaacaacaacaaaaaaatcgcagccctgtttaaattaaaaatgaagtccgtaaacataagaaataaataatata 3954211  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 3954750 - 3954805
Alignment:
Q  104 aaatcggt-atgagagtgaggaaacgtgtttcaacttttgtgagggaatgaaataa 158  Q
    |||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  3954750 aaatcggtgatgagagcgaggaaacatgtttcaacttttgtgaaggaatgaaataa 3954805  T

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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 13460048 - 13459945
Alignment:
Q  1 aagcagtcacaacaacagcnnnnnnntcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatatacaacgagtttaggcgat 100  Q
    |||||||||||||||||||       || ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||    
T  13460048 aagcagtcacaacaacagcaaaaaaatcacagccctgtttaaattaaaaatgaaatccgtaaacataagaaataaataatataaaacgagtttaggcgat 13459949  T
Q  101 gaga 104  Q
    ||||    
T  13459948 gaga 13459945  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 48209064 - 48208966
Alignment:
Q  1 aagcagtcacaacaacagcnnnnnnntcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatatacaacgagtttaggcga 99  Q
    ||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||    
T  48209064 aagcagtcacagcaacagcaaaaaaatcgcagccctgtttaaattaaaaatgaagtccgtaaacataagaaacaaataatataaaacgagtttaggcga 48208966  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 9578945 - 9579017
Alignment:
Q  27 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatatacaacgagtttaggcga 99  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||    
T  9578945 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataagaaacaaataatataaaacgagtttaggcga 9579017  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 9584640 - 9584712
Alignment:
Q  27 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatatacaacgagtttaggcga 99  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||    
T  9584640 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataagaaacaaataatataaaacgagtttaggcga 9584712  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 35464904 - 35464832
Alignment:
Q  27 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatatacaacgagtttaggcga 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||    
T  35464904 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataagaaataaataatataaaacgagttcaggcga 35464832  T

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Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 10978718 - 10978623
Alignment:
Q  4 cagtcacaacaacagcnnnnnnntcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatatacaacgagtttaggcga 99  Q
    ||||||||||||||||       || ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||    
T  10978718 cagtcacaacaacagcaaaaaaatcacagccctgtttaaattaaaaatgaagttcgtaaacataagaaataaataatataaaacgagtttaggcga 10978623  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 10428463 - 10428519
Alignment:
Q  27 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatata 83  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10428463 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataagaaataaataatata 10428519  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 35779642 - 35779695
Alignment:
Q  29 gcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatata 83  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35779642 gcagccctgtttaaattaaaaatgaagtccgtaaacataa-aaataaataatata 35779695  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 47128808 - 47128726
Alignment:
Q  1 aagcagtcacaacaacagcnnnnnnntcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatata 83  Q
    ||||||||||| |||||||       ||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  47128808 aagcagtcacagcaacagcaaaaaaatcgcagccctgtttaaattaaaaatgaagtttgtaaacataagaaataaataatata 47128726  T

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Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 9579365 - 9579419
Alignment:
Q  104 aaatcggt-atgagagtgaggaaacgtgtttcaacttttgtgagggaatgaaata 157  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  9579365 aaatcggtgatgagagtgaggaaacgtgtttcaacttttgtgagcgaatgaaata 9579419  T

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Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 9585060 - 9585114
Alignment:
Q  104 aaatcggt-atgagagtgaggaaacgtgtttcaacttttgtgagggaatgaaata 157  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  9585060 aaatcggtgatgagagtgaggaaacgtgtttcaacttttgtgagcgaatgaaata 9585114  T

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Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 10978288 - 10978233
Alignment:
Q  104 aaatcggt-atgagagtgaggaaacgtgtttcaacttttgtgagggaatgaaataa 158  Q
    |||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  10978288 aaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 10978233  T

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Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 34769447 - 34769502
Alignment:
Q  104 aaatcggt-atgagagtgaggaaacgtgtttcaacttttgtgagggaatgaaataa 158  Q
    |||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  34769447 aaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 34769502  T

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Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 23510082 - 23510164
Alignment:
Q  1 aagcagtcacaacaacagcnnnnnnntcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatata 83  Q
    ||||||||||| |||||||       |||||||||||||||||||||| |||||||| | |||||||| ||| ||||||||||    
T  23510082 aagcagtcacatcaacagcaaaaaaatcgcagccctgtttaaattaaacatgaagtctgcaaacataagaaacaaataatata 23510164  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 47128152 - 47128097
Alignment:
Q  104 aaatcggt-atgagagtgaggaaacgtgtttcaacttttgtgagggaatgaaataa 158  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  47128152 aaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaacgaaataa 47128097  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 17679390 - 17679335
Alignment:
Q  104 aaatcggt-atgagagtgaggaaacgtgtttcaacttttgtgagggaatgaaataa 158  Q
    |||||||| ||||||| |||||||| ||||| ||||||||||||||||||| ||||    
T  17679390 aaatcggtgatgagagcgaggaaacatgtttaaacttttgtgagggaatgacataa 17679335  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 48208621 - 48208566
Alignment:
Q  104 aaatcggt-atgagagtgaggaaacgtgtttcaac-ttttgtgagggaatgaaata 157  Q
    |||||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||    
T  48208621 aaatcggtgatgagagcgaggaaatgtgtttcaactttttgtgagggaatgaaata 48208566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 13459942 - 13459904
Alignment:
Q  120 gaggaaacgtgtttcaacttttgtgagggaatgaaataa 158  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  13459942 gaggaaacgcgtttcaacttttgtgagagaatgaaataa 13459904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 13535000 - 13535068
Alignment:
Q  31 agccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatatacaacgagtttaggcga 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13535000 agccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatataaaacgagtttaggcga 13535068  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 13624540 - 13624608
Alignment:
Q  31 agccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatatacaacgagtttaggcga 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13624540 agccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatataaaacgagtttaggcga 13624608  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 41878971 - 41878917
Alignment:
Q  27 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataata 81  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41878971 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataagaaataaataata 41878917  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 45475627 - 45475571
Alignment:
Q  27 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatata 83  Q
    |||||||||| |||||||||||||||||||| ||||||| || ||||||||||||||    
T  45475627 tcgcagccctatttaaattaaaaatgaagtctgtaaacaaaagaaataaataatata 45475571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 41878323 - 41878285
Alignment:
Q  120 gaggaaacgtgtttcaacttttgtgagggaatgaaataa 158  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  41878323 gaggaaatgcgtttcaacttttgtgagggaatgaaataa 41878285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 4978780 - 4978708
Alignment:
Q  27 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatatacaacgagtttaggcga 99  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||    
T  4978780 tcgcagccctatttaaattaaaaatgaagtccgtaaacataagaaataaataatataaaatgagtttaggcga 4978708  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 4971913 - 4971966
Alignment:
Q  30 cagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatata 83  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  4971913 cagccctatttaaattaaaaatgaagtccgtaaacataagaaataaataatata 4971966  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 5315927 - 5315872
Alignment:
Q  104 aaatcggt-atgagagtgaggaaacgtgtttcaacttttgtgagggaatgaaataa 158  Q
    |||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  5315927 aaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 5315872  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 50880712 - 50880666
Alignment:
Q  112 atgagagtgaggaaacgtgtttcaacttttgtgagggaatgaaataa 158  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||||    
T  50880712 atgagagcgaggaaacgcgtttcaacttttgtcagggaatgaaataa 50880666  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 16592381 - 16592437
Alignment:
Q  27 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatata 83  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16592381 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataagaaataaataatata 16592437  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 22986854 - 22986910
Alignment:
Q  27 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatata 83  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22986854 tcgcagccctgtttaaattaaaaatgaagtccgtaaacataagaaataaataatata 22986910  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 30854124 - 30854067
Alignment:
Q  27 tcgcagccctgtttaaattaaaaatgaagtccgtaaacat-aataaataaataatata 83  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||    
T  30854124 tcgcagccctgtttaaattaaaaatgaagtctgtaaacataaaaaaataaataatata 30854067  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 16592748 - 16592791
Alignment:
Q  115 agagtgaggaaacgtgtttcaacttttgtgagggaatgaaataa 158  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  16592748 agagtgaggaaacgcgtttcaacttttgtgagggaatgaaataa 16592791  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 30853429 - 30853383
Alignment:
Q  112 atgagagtgaggaaacgtgtttcaacttttgtgagggaatgaaataa 158  Q
    |||||||  |||||||| |||||||||||||||||||||||||||||    
T  30853429 atgagagcaaggaaacgcgtttcaacttttgtgagggaatgaaataa 30853383  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 19737976 - 19738058
Alignment:
Q  1 aagcagtcacaacaacagcnnnnnnntcgcagccctgtttaaattaaaaatgaagtccgtaaacataataaataaataatata 83  Q
    ||||||||||| |||||||       |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19737976 aagcagtcacatcaacagcaaaaaaatcgcagtcctgtttaaattaaaaatgaagtccgtaaacataagaaataaataatata 19738058  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 34693315 - 34693260
Alignment:
Q  104 aaatcggt-atgagagtgaggaaacgtgtttcaacttttgtgagggaatgaaataa 158  Q
    |||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  34693315 aaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 34693260  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 34715727 - 34715672
Alignment:
Q  104 aaatcggt-atgagagtgaggaaacgtgtttcaacttttgtgagggaatgaaataa 158  Q
    |||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  34715727 aaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 34715672  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 40636119 - 40636036
Alignment:
Q  115 agagtgaggaaacgtgtttcaacttttgtgagggaatgaaataannnnnnnnnatcgaaggatttatattatactgagtataaa 198  Q
    |||||||||||||| |||| ||||||||||||||||||||||||         || ||||||| |||||||||||| |||||||    
T  40636119 agagtgaggaaacgcgttttaacttttgtgagggaatgaaataatttttttttattgaaggatatatattatactgggtataaa 40636036  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 5952854 - 5952900
Alignment:
Q  112 atgagagtgaggaaacgtgtttcaacttttgtgagggaatgaaataa 158  Q
    |||||||  |||||||| |||||||||||||||||||||||||||||    
T  5952854 atgagagcaaggaaacgcgtttcaacttttgtgagggaatgaaataa 5952900  T

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