View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20747_high_11 (Length: 311)
Name: NF20747_high_11
Description: NF20747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20747_high_11 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 34439685 - 34439375
Alignment:
| Q |
1 |
ttcaaaaattgaaagcaagattaaaagcttgcaatgcaaggatcaatagaaaggtgcagtctgacctatttctttctaatccaataaggaatccagcttc |
100 |
Q |
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| T |
34439685 |
ttcaaaaattgaaagcaagattaaaagcttgcaatgcaaggatcaatagaaaggtgtagtctgacctatttctttctaatccaataaggaatccagcttc |
34439586 |
T |
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| Q |
101 |
agccacaccagccaaaatggttccaaacttagcttgcttgtctcctattagagcatattcactcacaaaagcctatatataggacattccaattttccaa |
200 |
Q |
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| T |
34439585 |
agccacaccagccaaaatggttccaaacttagcttgcttgtctcctattagagcatattcactcacaaaagcctatatataggacattccaattttccaa |
34439486 |
T |
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| Q |
201 |
gcgttaacttaacaaccaaattcttacacaatataaacaaatattttgatacaaaaagaagagagctacatgagaatgaatacaaaacctttggtccatt |
300 |
Q |
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| T |
34439485 |
gcgttaacttaacaaccaaattcttacacaatataaacaaatattttgatacaaaaagaagagagcttcatgagaatgaatacaaaacctttggtccatt |
34439386 |
T |
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| Q |
301 |
gcgtggtgact |
311 |
Q |
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||||||||||| |
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| T |
34439385 |
gcgtggtgact |
34439375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 34450444 - 34450151
Alignment:
| Q |
10 |
tgaaagcaagattaaaagcttgcaatgcaaggatcaatagaaaggtgcagtctgacctatttctttctaatccaataaggaatccagcttcagccacacc |
109 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| | ||| |
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| T |
34450444 |
tgaaagcaagattgaaagcttgcatcgcaaggatcaatagaaaggtgtagtctgacctgtttctttctagtccaataaggaatccagcttcagatagacc |
34450345 |
T |
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| Q |
110 |
agccaaaatggttccaaacttagcttgcttgtctcctattagagcatattcactcacaaaagcctatatataggacattccaattttccaagcgttaact |
209 |
Q |
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| T |
34450344 |
acctataagggttccgtgcctagctatgttggctcctattagagcatactcactcacaaaagcctatatatacgacattccaatttcacaagcattaatt |
34450245 |
T |
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| Q |
210 |
taacaaccaaattcttacacaatataaacaaatattttgatacaaaaagaagagagctacatgagaatgaatacaaaacctttggtccattgcgtgg |
306 |
Q |
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| T |
34450244 |
caacaaccaaattcttacacaatataaacaaatagtttgatacaaa---aagagagctgcatgagcatgaatacgaaacctttggtccattgcgtgg |
34450151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 174 - 311
Target Start/End: Complemental strand, 34466241 - 34466102
Alignment:
| Q |
174 |
tatatataggacattccaattttccaagcgttaacttaacaaccaaattcttacacaatataaacaaatat--tttgatacaaaaagaagagagctacat |
271 |
Q |
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|||||||| |||||||||||||||||||| |||||| ||| || |||||||||||||| ||||| ||| || ||||||||||||| ||||||||||||| |
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| T |
34466241 |
tatatataagacattccaattttccaagcattaactcaactactaaattcttacacaacataaaaaaaaatactttgatacaaaaataagagagctacat |
34466142 |
T |
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| Q |
272 |
gagaatgaatacaaaacctttggtccattgcgtggtgact |
311 |
Q |
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| T |
34466141 |
gagaatgaatacaatacctttggtccattgcgtggtgact |
34466102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 34466404 - 34466284
Alignment:
| Q |
61 |
ctgacctatttctttctaatccaataaggaatccagcttcagccacaccagccaaaatggttccaaacttagcttgcttgtctcctattagagcatattc |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||||| |||||||||| |||||||||||||||| || |
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| T |
34466404 |
ctgacctatttctttctaatccaataaggaatccagcttcagacacagctcccaaaagggttccatacttagcttgtagagctcctattagagcatactc |
34466305 |
T |
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| Q |
161 |
actcacaaaagcctatatata |
181 |
Q |
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||||||||||||||||||||| |
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| T |
34466304 |
actcacaaaagcctatatata |
34466284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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