View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20747_high_4 (Length: 464)
Name: NF20747_high_4
Description: NF20747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20747_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 138 - 320
Target Start/End: Complemental strand, 7142277 - 7142090
Alignment:
| Q |
138 |
ccaaattaaccaaaaccacctttctccccaaattaaca-----gaattaat-agaaggactgaattgggatggaaatataataaaatannnnnnnnatag |
231 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7142277 |
ccaaattaatcaaaaccacctttctccccaaattaacaacacggaattaatcagaatgactgaattgggatggaaatataataaaatattttttt-atag |
7142179 |
T |
|
| Q |
232 |
atagacgaaatgagaatagccattaaaaattcgcacacacaaatgaatgagtcagagtttgaacctcaatcacaatgttccgtccaaca |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7142178 |
atagacgaaatgagaatagccattaaaaattcgtacacacaaatgaatgagtaagagtttgaaccttaatcacaatgttccgtccaaca |
7142090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 380 - 464
Target Start/End: Complemental strand, 7142030 - 7141946
Alignment:
| Q |
380 |
caatgagcaaggtttgtttaactttaatttctgaaattacataattgaattcaaaatacattatgagtatcatggagttagacat |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7142030 |
caatgagcaaggtttgtttaactttaatttctgaaattacataattgaattcaaaatacattatgagtatcatggagttagacat |
7141946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 37138443 - 37138379
Alignment:
| Q |
231 |
gatagacgaaatgagaatagccattaaaaattcgcacacacaaatgaatgagtcagagtttgaac |
295 |
Q |
| |
|
|||||||||||| | || ||||| ||||||||||||||||||||| | ||||||| |||||||| |
|
|
| T |
37138443 |
gatagacgaaataataagagccagtaaaaattcgcacacacaaatagaggagtcagtgtttgaac |
37138379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University