View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20747_high_5 (Length: 417)
Name: NF20747_high_5
Description: NF20747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20747_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 26182908 - 26182532
Alignment:
| Q |
16 |
caaatccaagactgcaccaccaccaagcaaaggttcaatggatttaaacctcgaaaaggtgatgatcatgcaagaagatgaaaaagattttctcagtctc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
26182908 |
caaatccaagactgcaccaccaccaagcaaaggttcaatggatttaaacctcgaaaaggcgatgatcatgcaaaaagatgaaaaagattttctaagtctc |
26182809 |
T |
|
| Q |
116 |
caaaatgggacaagtgtgaagaa---tgaaaatgaagaggaagagatatggagaagatcaaagtcaaatgagaaattcaatggtttcttagatggttttt |
212 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26182808 |
caaaatgggataagtgtgaagaagaatgaaaatgaagaggaagagatatggagaagatcaaagtcaaatgagaaattcaatggtttcttagatggttttt |
26182709 |
T |
|
| Q |
213 |
cagaattagatggttttatggatgagttaagtactatgcctctacttaatcaaaattaaggcatgcttttgatgtgttgtttgttatttattttgctaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26182708 |
cagaattagatggttttatggatgagttaagtactatgcctctacttaatcaaaattaaggcatgcttttgatgtgttgtttgttatttattttgctaat |
26182609 |
T |
|
| Q |
313 |
tgatgtgtgcatatttatcacaaatattattcatagaaaaaacctatgcttcctcattgtagattgacaattagtta |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26182608 |
tgatgtgtgcatatttatcacaaatattattcatagaaaaaacttatgcttcctcattgtagattgacaattagtta |
26182532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University