View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20747_high_8 (Length: 364)
Name: NF20747_high_8
Description: NF20747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20747_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 9631936 - 9631590
Alignment:
| Q |
17 |
cacctttaacaatctcgaaccgtttagaccaatcaagttctaatgctctcttatcatcaatcaacatttcctctaaactccctcgatccatatactcata |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9631936 |
cacctttaacaatctcaaaccgtttagaccaatcaagctctaatgctctcttatcatcaatcaacatatcctctaaactccctcgatccatatactcata |
9631837 |
T |
|
| Q |
117 |
aacaagaaatgtgtgcatcccttcacaacaaaatccataaagcttcacaatgtttctgtgccttgtttctgtcatagcttcaacctcactttcaaatgtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9631836 |
aacaagaaatgtgtgcatcccttcacaacaaaatccataaagcttcacaatgtttctgtgccttgtttctgtcatagcttcaacctcactttcaaatgtt |
9631737 |
T |
|
| Q |
217 |
tttatactctcggtgtctaagttttcttcatcacatttcagctttttcaccgcaaatatttgacctcctttcagttcggctttgtaaacatttccaaacg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9631736 |
tttatactctcggtgtctaagttttcttcatcacatttcagctttttcaccgcaaatatttgacctcctttcagttcggctttgtaaacatttccaaacg |
9631637 |
T |
|
| Q |
317 |
cgccttcgccaatgcaatacttattgtcaaaactgttggtagcttca |
363 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
9631636 |
cgccttcgccaatgcaatacttgttgtcgaaattgttggtagcttca |
9631590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 3955557 - 3955601
Alignment:
| Q |
143 |
aacaaaatccataaagcttcacaatgtttctgtgccttgtttctg |
187 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
3955557 |
aacaaaatccataaagcttcacaatatttctgtgctttatttctg |
3955601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 13605310 - 13605656
Alignment:
| Q |
17 |
cacctttaacaatctcgaaccgtttagaccaatcaagttctaatgctctcttatcatcaatcaacatttcctctaaactccctcgatccatatactcata |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13605310 |
cacctttaacaatctcaaaccgtttagaccaatcaagctctaatgctctcttatcatcaatcaacatatcctctaaactccctcgatccatatactcata |
13605409 |
T |
|
| Q |
117 |
aacaagaaatgtgtgcatcccttcacaacaaaatccataaagcttcacaatgtttctgtgccttgtttctgtcatagcttcaacctcactttcaaatgtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13605410 |
aacaagaaatgtgtgcatcccttcacaacaaaatccataaagcttcacaatgtttctgtgccttgtttctgtcatagcttcaacctcactttcaaatgtt |
13605509 |
T |
|
| Q |
217 |
tttatactctcggtgtctaagttttcttcatcacatttcagctttttcaccgcaaatatttgacctcctttcagttcggctttgtaaacatttccaaacg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13605510 |
tttatactctcggtgtctaagttttcttcatcacatttcagctttttcaccgcaaatatttgacctcctttcagttcggctttgtaaacatttccaaacg |
13605609 |
T |
|
| Q |
317 |
cgccttcgccaatgcaatacttattgtcaaaactgttggtagcttca |
363 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
13605610 |
cgccttcgccaatgcaatacttgttgtcgaaattgttggtagcttca |
13605656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 13904672 - 13904328
Alignment:
| Q |
19 |
cctttaacaatctcgaaccgtttagaccaatcaagttctaatgctctcttatcatcaatcaacatttcctctaaactccctcgatccatatactcataaa |
118 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| || ||||||| |||||||| |||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
13904672 |
cctttaacaatatcaaaccgtttagaccaatcaagttccaaagctctctcatcatcaaccaacatatcctctaaactccctctatccatgtactcataaa |
13904573 |
T |
|
| Q |
119 |
caagaaatgtgtgcatcccttcacaacaaaatccataaagcttcacaatgtttctgtgccttgtttctgtcatagcttcaacctcactttcaaatgtttt |
218 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13904572 |
caagaaatgtgtgcatccctttacaacaaaatccatatagcttcgcaatgtttctgtgccttgtttctgtcatagcttcaacctcactttcaaatgtttt |
13904473 |
T |
|
| Q |
219 |
tatactctcggtgtctaagttttcttcatcacatttcagctttttcaccgcaaatatttgacctcctttcagttcggctttgtaaacatttccaaacgcg |
318 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13904472 |
tatactctcagtgtctaagttttctttatcacattttagctttttcaccgcgaatatttgacctcctttcagttcggctttgtaaacatttccaaatgca |
13904373 |
T |
|
| Q |
319 |
ccttcgccaatgcaatacttattgtcaaaactgttggtagcttca |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13904372 |
ccttcgccaatgcaatacttattgtcaaaactgttggtagcttca |
13904328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University