View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20747_low_1 (Length: 701)
Name: NF20747_low_1
Description: NF20747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20747_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 18 - 685
Target Start/End: Complemental strand, 44628313 - 44627650
Alignment:
| Q |
18 |
aaagcatactgattcaatctaaatacatgtgtagtgatcaaacatttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaa- |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44628313 |
aaagcatactgattcaatctaaatacatgtgtagtgatcaaaggtttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaaa |
44628214 |
T |
|
| Q |
117 |
caattaccaaagtcttcaatatgatcttgtcaaggtcagatcagagcaccatcataactcgatcaattatttaattccaagaagagatcatcctacaagc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44628213 |
caattaccaaagtcttcaatatgatcttgtcaaggtcaga-----gcaccatcataactcgatcaattatttaattccaagaagagatcatcctacaagc |
44628119 |
T |
|
| Q |
217 |
aaaaatcatatcatatattatataaaccatagatgaaatagtaatttaaaatttaataggaaacagaacaatgtaaaattttttacaacttcaaagtaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
44628118 |
aaaaatcatatcatatattatataaaccatagatgaaatagtaatttaaaatttaataggaaacagaacaatgtacaaaattttacaacttcaaagtaaa |
44628019 |
T |
|
| Q |
317 |
catattcaatagttagtaactcgatcatttacattttaaagtttgattaataaactaaatccaacatagctacttagtaaacaacaaatacaatgacatg |
416 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44628018 |
catattcaatagttagtaactcaatcatttacattttaaagtttgattaataaactcaatccaacatagctacttagtaaacaacaaatacaatgacatg |
44627919 |
T |
|
| Q |
417 |
atgaattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttaaaaaaggcacttacaaagagtagtttttgaatcagggcat |
516 |
Q |
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| T |
44627918 |
atgaattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttaaaaaaggcacttacaaagagtagtttttgaatcagggcgt |
44627819 |
T |
|
| Q |
517 |
tgcacgtgtagaagaggatcctctcttctggcgttccttctctccttgcttgaaggacttcttgtttttctttagaagcttgaaaagatctttgataacc |
616 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44627818 |
tgcacgtgtagaagaggatcctctcttccggcgctccttctctccttgcttgaaggacttcttgtttttctttagaagcttgaaaagatctttgataacc |
44627719 |
T |
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| Q |
617 |
aagttcatctcttcttcgtcgtcactgtcaacttcttcatcatcctttcttgacgacaccactgcactg |
685 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44627718 |
aagttcatctcttcttcttcatcactgtcaacttcttcatcatcctttcttgacgacgccactgcactg |
44627650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 42388496 - 42388592
Alignment:
| Q |
22 |
catactgattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaac |
117 |
Q |
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||||| ||||||||||||| ||| ||||||| |||| | ||| | | |||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
42388496 |
cataccgattcaatctaaa-acaagtgtagttatcacaagcatgtttcgttccactgcatttgattccttaacatgtccaatctaaaagaagaaaaac |
42388592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 501 - 644
Target Start/End: Complemental strand, 26080955 - 26080812
Alignment:
| Q |
501 |
ttttgaatcagggcattgcacgtgtagaagaggatcctctcttctggcgttccttctctccttgcttgaaggacttcttgtttttctttagaagcttgaa |
600 |
Q |
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||||||||||| ||||| ||| ||||||||||||||| ||| | | |||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26080955 |
ttttgaatcagaacattgtacgcgtagaagaggatcctttctccctgtgttctttctctccttgcttgaaggacttcttgtttttctttagaagcttgga |
26080856 |
T |
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| Q |
601 |
aagatctttgataaccaagttcatctcttcttcgtcgtcactgt |
644 |
Q |
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||| ||||| | ||||||||||| |||||| ||||||||||| |
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| T |
26080855 |
aaggtctttcaaaaccaagttcacctcttcagagtcgtcactgt |
26080812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 26081640 - 26081537
Alignment:
| Q |
28 |
gattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaa-caattacc |
124 |
Q |
| |
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||||||||||||| ||| || ||||||||| | ||||| |||||||| || |||||||||| ||||||||||||||||||||| ||||| |||||||| |
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| T |
26081640 |
gattcaatctaaaaacaagtttagtgatcacaagcattttttgttccaatggatttgattccttaacatgtccaatctaaaagacgaaaaaccaattacc |
26081541 |
T |
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| Q |
125 |
aaag |
128 |
Q |
| |
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|||| |
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| T |
26081540 |
aaag |
26081537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 420 - 510
Target Start/End: Original strand, 2850786 - 2850876
Alignment:
| Q |
420 |
aattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttaaaaaaggcacttacaaagagtagtttttgaatca |
510 |
Q |
| |
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||||||||||| |||||||| | ||| ||||||||||||| |||||||||||||| |||| ||||||||| ||||| ||||||||||| |
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| T |
2850786 |
aattttcattttctcttcaagtgcctgtgtgtgaagtttcagctgtagaacaagttagaaaaaacacttacaaggagtactttttgaatca |
2850876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 420 - 510
Target Start/End: Original strand, 2902818 - 2902908
Alignment:
| Q |
420 |
aattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttaaaaaaggcacttacaaagagtagtttttgaatca |
510 |
Q |
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||||||||||| |||||||| | ||| ||||||||||||| |||||||||||||| |||| ||||||||| ||||| ||||||||||| |
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| T |
2902818 |
aattttcattttctcttcaagtgcctgtgtgtgaagtttcagctgtagaacaagttagaaaaaacacttacaaggagtactttttgaatca |
2902908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 34597432 - 34597529
Alignment:
| Q |
22 |
catactgattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaac |
117 |
Q |
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||||| ||||||||||||| ||| ||||||| |||| | ||| | |||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
34597432 |
cataccgattcaatctaaaaacaagtgtagttatcacaagcatgttttgttccactgcatttgattccttaacatgtccaatctaaaagaagaaaaac |
34597529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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