View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20747_low_12 (Length: 270)

Name: NF20747_low_12
Description: NF20747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20747_low_12
NF20747_low_12
[»] chr7 (4 HSPs)
chr7 (58-255)||(34439815-34440012)
chr7 (1-71)||(34439121-34439191)
chr7 (157-192)||(18349758-18349793)
chr7 (137-251)||(45369086-45369201)
[»] chr8 (2 HSPs)
chr8 (208-251)||(11038106-11038149)
chr8 (143-176)||(4403646-4403679)
[»] chr3 (2 HSPs)
chr3 (216-251)||(21007767-21007802)
chr3 (129-169)||(48089728-48089768)
[»] chr2 (2 HSPs)
chr2 (216-251)||(36374240-36374275)
chr2 (60-88)||(42973018-42973046)
[»] chr5 (1 HSPs)
chr5 (137-251)||(13224665-13224779)
[»] chr6 (1 HSPs)
chr6 (139-251)||(29240500-29240613)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 58 - 255
Target Start/End: Complemental strand, 34440012 - 34439815
Alignment:
Q  58 tgaatgtaaagtaatttatgtttgaatacatgtacaaatgaattgaaagataaatgtgaggcnnnnnnnnccatttgttgaggcaaaagcttcaaatttt 157  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  34440012 tgaatgtaaagtaatttatgtttggatacatgcacaaatgaattgaaagataaatgtgaggcaaaaaaaaccatttgttgaggcaaaagcttcaaatttt 34439913  T
Q  158 aacttcaaattaaaatcaattatagagtcaaaatcagttctactaaggatatccaaatatgtcaaaatcaattatatacctttaaaatcaatttgtct 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34439912 aacttcaaattaaaatcaattatagagtcaaaatcagttctactaaagatatccaaatatgtcaaaatcaattatatacctttaaaatcaatttgtct 34439815  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 34439121 - 34439191
Alignment:
Q  1 aattatttcaaattgtgatgctcatgagaagccgctagatcacccagccgatctgtatgaatgtaaagtaa 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34439121 aattatttcaaattgtgatgctcatgagaagccgctagatcacccagccgatctgtatgaatataaagtaa 34439191  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 18349793 - 18349758
Alignment:
Q  157 taacttcaaattaaaatcaattatagagtcaaaatc 192  Q
    |||||||||||||||||||||||| |||||||||||    
T  18349793 taacttcaaattaaaatcaattatggagtcaaaatc 18349758  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 45369201 - 45369086
Alignment:
Q  137 gaggcaaaagcttcaaattttaacttcaaattaaaatcaattatagagtcaaaatcagttctac-taaggatatccaaatatgtcaaaatcaattatata 235  Q
    |||||||||||| | |||| || |||||| |||||||||||| ||||  |||||||| |||||| | || | ||||||| || |||||||||| | || |    
T  45369201 gaggcaaaagctccgaattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaacatctcaaaatcaaatctaca 45369102  T
Q  236 cctttaaaatcaattt 251  Q
    ||| | ||||||||||    
T  45369101 cctctgaaatcaattt 45369086  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 11038149 - 11038106
Alignment:
Q  208 atccaaatatgtcaaaatcaattatatacctttaaaatcaattt 251  Q
    ||||||| ||||||||||||||||||||||| || |||||||||    
T  11038149 atccaaacatgtcaaaatcaattatatacctctagaatcaattt 11038106  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 4403646 - 4403679
Alignment:
Q  143 aaagcttcaaattttaacttcaaattaaaatcaa 176  Q
    |||||| |||||||||||||||||||||||||||    
T  4403646 aaagctacaaattttaacttcaaattaaaatcaa 4403679  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 21007767 - 21007802
Alignment:
Q  216 atgtcaaaatcaattatatacctttaaaatcaattt 251  Q
    |||||||||||||||||||| |||||||||||||||    
T  21007767 atgtcaaaatcaattatatatctttaaaatcaattt 21007802  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 48089728 - 48089768
Alignment:
Q  129 catttgttgaggcaaaagcttcaaattttaacttcaaatta 169  Q
    ||||||| |||||||||||||||| || |||||||||||||    
T  48089728 catttgtagaggcaaaagcttcaagttctaacttcaaatta 48089768  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 36374275 - 36374240
Alignment:
Q  216 atgtcaaaatcaattatatacctttaaaatcaattt 251  Q
    |||||||||||||||||| |||||||||||||||||    
T  36374275 atgtcaaaatcaattatacacctttaaaatcaattt 36374240  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 42973046 - 42973018
Alignment:
Q  60 aatgtaaagtaatttatgtttgaatacat 88  Q
    |||||||||||||||||||||||||||||    
T  42973046 aatgtaaagtaatttatgtttgaatacat 42973018  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 13224665 - 13224779
Alignment:
Q  137 gaggcaaaagcttcaaattttaacttcaaattaaaatcaattatagagtcaaaatcagttctactaaggatatccaaatatgtcaaaatcaattatatac 236  Q
    |||| ||||||| |||||| || |||||| ||  ||| |||||||||  |||||||| || ||||  | | ||||||| |||||||||||||||||| |     
T  13224665 gaggtaaaagctccaaattctagcttcaagtttgaatgaattatagaaacaaaatcaattatactcggaacatccaaacatgtcaaaatcaattatacat 13224764  T
Q  237 ctttaaaatcaattt 251  Q
    || || |||||||||    
T  13224765 ctctagaatcaattt 13224779  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 29240500 - 29240613
Alignment:
Q  139 ggcaaaagcttcaaattttaacttcaaattaaaatcaattatagagtcaaaatcagttctac-taaggatatccaaatatgtcaaaatcaattatatacc 237  Q
    ||||||| |||||||||||| |||||| ||| |||||| | | |||  ||||||| |||||| | |  |||||| || ||||||||||||||| || |||    
T  29240500 ggcaaaaacttcaaattttagcttcaagttagaatcaactctggaggtaaaatcaattctacttgaaaatatcctaacatgtcaaaatcaattttacacc 29240599  T
Q  238 tttaaaatcaattt 251  Q
    | || |||||||||    
T  29240600 tctagaatcaattt 29240613  T

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