View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20747_low_13 (Length: 229)
Name: NF20747_low_13
Description: NF20747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20747_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4653010 - 4653226
Alignment:
| Q |
1 |
catcgaagttatttgtggctgctttgatctctgcgattgtgaaggagcgacacaaatgtggtggcaaagatgacgaccctttgttctttgtctttgatga |
100 |
Q |
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| T |
4653010 |
catcgaagttatttgtggctgctttgatctctgcgattgtgaaggagcgacacaaatgtggtggcaaagatgacgaccctttgttctttgtctttgatga |
4653109 |
T |
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| Q |
101 |
gctatctttcatgacaatatgaagctttttccttagccnnnnnnntgtgttgcctacgatcattgctagcaagaggccggaaactataatcgtcgcaaca |
200 |
Q |
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| T |
4653110 |
gctatctttcatgacaatatgaagctttttccttagccaaaaaaatgtgttgcctacgatcattgctagcaagaggctggaaactacaatcgtcgcaaca |
4653209 |
T |
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| Q |
201 |
atcgctatggtgatctt |
217 |
Q |
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||||||||||||||||| |
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| T |
4653210 |
atcgctatggtgatctt |
4653226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 4672130 - 4672266
Alignment:
| Q |
1 |
catcgaagttatttgtggctgctttgatctctgcgattgtgaaggagcgacacaaatgtggtggcaaagatgacgaccctttgttctttgtctttgatga |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||| || ||||| || || ||||||| || |||||||||||||||||||| ||||| |
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| T |
4672130 |
catcgaagttgtttgtggctgctttgatctctgcgattgtaaaggaacggcacaagtggggcggcaaaggtggtgaccctttgttctttgtcttcgatga |
4672229 |
T |
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| Q |
101 |
gctatctttcatgacaatatgaagctttttccttagc |
137 |
Q |
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| T |
4672230 |
gctatctttcatggcatttttaatccttttccttagc |
4672266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4643194 - 4643263
Alignment:
| Q |
1 |
catcgaagttatttgtggctgctttgatctctgcgattgtgaaggagcgacacaaatgtggtggcaaaga |
70 |
Q |
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| T |
4643194 |
catcgaagttgtttgtagctgctttgatctctgcgattgtaaaggagcggcacagatggggcggcaaaga |
4643263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 4666430 - 4666515
Alignment:
| Q |
6 |
aagttatttgtggctgctttgatctctgcgattgtgaaggagcgacacaaatgtggtggcaaagatgacgaccctttgttctttgt |
91 |
Q |
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| T |
4666430 |
aagttgtttgtggctgctctgatctctgcaattgtaaaggaccggcacaaatggggcggcaaagatgacaactctgtgttctttgt |
4666515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 4636347 - 4636437
Alignment:
| Q |
1 |
catcgaagttatttgtggctgctttgatctctgcgattgtgaaggagcgacacaaatgtggtggcaaagatgacgaccctttgttctttgt |
91 |
Q |
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| T |
4636347 |
catcgaagttttttgtggctgctctgatctctgcgattgtaaagtagcggcacaaataggatggtaaagttgacgaaccttcattctttgt |
4636437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 4661294 - 4661387
Alignment:
| Q |
1 |
catcgaagttatttgtggctgctttgatctctgcgattgtgaaggagcgacacaaatgtggtggcaaagatgacgaccctttgttctttgtctt |
94 |
Q |
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|||| ||||| |||||||||||| |||||||||| ||||| ||| |||| |||||||| || ||||||||||| ||| ||||||||||||| |
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| T |
4661294 |
catcaaagttttttgtggctgctctgatctctgcaattgtaaagtagcggcacaaatggggcggcaaagatgataacctagtgttctttgtctt |
4661387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 4630404 - 4630456
Alignment:
| Q |
6 |
aagttatttgtggctgctttgatctctgcgattgtgaaggagcgacacaaatg |
58 |
Q |
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| T |
4630404 |
aagttgtttgtggctgctttgatctccgcgattgtaaagtagcgacacaaatg |
4630456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 18926365 - 18926285
Alignment:
| Q |
1 |
catcgaagttatttgtggctgctttgatctctgcgattgtgaaggagcgacacaaatgtggtggcaaagatgacgaccctt |
81 |
Q |
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|||| |||||||||||||||||||| |||||||| ||||| ||| |||| |||||||| || || ||||||| | |||||| |
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| T |
18926365 |
catcaaagttatttgtggctgcttttatctctgcaattgtaaagtagcggcacaaatggggcggtaaagatggcaaccctt |
18926285 |
T |
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