View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20747_low_14 (Length: 226)

Name: NF20747_low_14
Description: NF20747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20747_low_14
NF20747_low_14
[»] chr6 (12 HSPs)
chr6 (18-217)||(33643811-33644010)
chr6 (25-142)||(33058320-33058437)
chr6 (39-142)||(33263394-33263497)
chr6 (25-163)||(33305223-33305357)
chr6 (59-142)||(33359472-33359555)
chr6 (25-142)||(33401377-33401494)
chr6 (25-142)||(33286302-33286419)
chr6 (25-142)||(9167523-9167640)
chr6 (25-142)||(31562022-31562139)
chr6 (25-142)||(33272555-33272673)
chr6 (40-137)||(33410701-33410798)
chr6 (25-131)||(33388809-33388915)
[»] chr4 (7 HSPs)
chr4 (25-140)||(31157992-31158107)
chr4 (25-78)||(31484024-31484077)
chr4 (25-140)||(31149118-31149233)
chr4 (25-139)||(31503339-31503453)
chr4 (25-137)||(31527180-31527292)
chr4 (102-140)||(31491076-31491114)
chr4 (25-65)||(31498105-31498145)
[»] chr2 (1 HSPs)
chr2 (25-162)||(17440036-17440170)
[»] scaffold1408 (1 HSPs)
scaffold1408 (25-143)||(1384-1502)
[»] scaffold0428 (1 HSPs)
scaffold0428 (25-143)||(7130-7248)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 33643811 - 33644010
Alignment:
Q  18 gcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33643811 gcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaac 33643910  T
Q  118 aagaaggtaatataaattctcttatatattattaatgtttatcttacaattgtcatacaatcaaagtaatgtatttatttttcttggcttttcatctcac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33643911 aagaaggtaatataaattctcttatatattattaatgtttatcttacaattgtcatacaatcaaagtaatgtatttatttttcttggcttttcatgtcac 33644010  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 33058437 - 33058320
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    ||||||| || || |||||||||||||||||| |||||| |||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||    
T  33058437 tatccttccaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgacggagagcaacattaaacaactatggaaaaacaagaagg 33058338  T
Q  125 taatataaattctcttat 142  Q
    || |||||||||| ||||    
T  33058337 tactataaattctattat 33058320  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 33263497 - 33263394
Alignment:
Q  39 tttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaaggtaatataaattctc 138  Q
    ||||||||||| |||||| |||||| |||||||||||||| |||||  ||| |||||||||| ||||||||||||||||||||||||| |||||||||||    
T  33263497 tttgccatcaagttttcaccccaatgaacttgtagaattgatcttggtgaaaagcaacattacacaactatggaaaaacaagaaggtactataaattctc 33263398  T
Q  139 ttat 142  Q
    ||||    
T  33263397 ttat 33263394  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 163
Target Start/End: Complemental strand, 33305357 - 33305223
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    |||||||| | || |||||||||||||||||| |||||| |||||||||||||| |||| ||||  ||||| |||  ||||||||||| |||||||||||    
T  33305357 tatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaacaagaagg 33305258  T
Q  125 taatataaattctcttatatattattaatgtttatctta 163  Q
    || ||||||||||||    ||||||||||||||||||||    
T  33305257 tactataaattctct----tattattaatgtttatctta 33305223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 33359555 - 33359472
Alignment:
Q  59 ccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaaggtaatataaattctcttat 142  Q
    ||||| |||||||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  33359555 ccaatgaacttgtagaattgatcttgaagaaaagcagcattaaacaactatggaaaaacaagaaggtaatataaattctcttat 33359472  T

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Target: chr6; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 33401494 - 33401377
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    |||||||||| || ||||||| ||| |||||| |||||| |||||||||||||| |||||  |   |||||||||| |||||||||||||||||||||||    
T  33401494 tatcctttcaagtatttgccaacaagttttcaccccaatgaacttgtagaattgatcttgtggtgtagcaacattaaacaactatggaaaaacaagaagg 33401395  T
Q  125 taatataaattctcttat 142  Q
    || |||||||||||||||    
T  33401394 tactataaattctcttat 33401377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 33286419 - 33286302
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    ||||||||||  | |||||||||||||||||| |||||| |||||||||||||| ||||| | |  |||||||||| ||||||||||| ||| |||||||    
T  33286419 tatcctttcaaatatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgcatagtagcaacattaaacaactatggagaaagaagaagg 33286320  T
Q  125 taatataaattctcttat 142  Q
    || |||||||| ||||||    
T  33286319 tactataaattatcttat 33286302  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 9167640 - 9167523
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    |||||||||| || ||||||||| | ||||||  ||||| |||||||| || || |||||||   ||||||||||| |||||||||||||||||| ||||    
T  9167640 tatcctttcaagtatttgccatcgagttttcacgccaatgaacttgtacaactgatcttgaactggagcaacattaaacaactatggaaaaacaaaaagg 9167541  T
Q  125 taatataaattctcttat 142  Q
    || |||||| ||||||||    
T  9167540 tactataaactctcttat 9167523  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 31562022 - 31562139
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    |||||||||| || ||||||||||| |||||| ||| || |||||||||||||| |||||  ||  |||| |||||  |||||||||| |||||||||||    
T  31562022 tatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttggcgagaagcagcattacgcaactatggacaaacaagaagg 31562121  T
Q  125 taatataaattctcttat 142  Q
    || | |||||| ||||||    
T  31562122 tactgtaaattatcttat 31562139  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 33272673 - 33272555
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    |||||||||| |||| | ||| ||| |||||| |||||| | ||| |||||||| |||||| ||| ||| |||| | |||||||||||||||||||||||    
T  33272673 tatcctttcaagtgtctaccaacaagttttcaccccaatgaccttatagaattgatcttgatgaatagcgacatcaaacaactatggaaaaacaagaagg 33272574  T
Q  125 ta-atataaattctcttat 142  Q
    ||  |||||||||| ||||    
T  33272573 tacctataaattctattat 33272555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 33410798 - 33410701
Alignment:
Q  40 ttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaaggtaatataaattct 137  Q
    ||||||| || |||||| || ||| ||||||| |||||| |||||||||| |||| | | | |||||||||||||| |||||||||| ||||||||||    
T  33410798 ttgccattaagttttcaccctaatgaacttgttgaattgatcttgaagaatagcagcttcaaacaactatggaaaagcaagaaggtactataaattct 33410701  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 33388915 - 33388809
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    |||||||||| || ||||||||||| |||||| |||| | | |||||||| ||| |||||| | | ||| |||| | |||||||||||| ||||||||||    
T  33388915 tatcctttcaagtatttgccatcaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 33388816  T
Q  125 taatata 131  Q
    || ||||    
T  33388815 tattata 33388809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 31158107 - 31157992
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    |||||||||| || ||||||| ||  ||||||||||||||||||||| |||||| || ||| | | |||| | | | ||||||||||||| |||||||||    
T  31158107 tatcctttcaagtatttgccagcatgttttcagcccaatcaacttgttgaattgatcatgaggcatagcagcgtcaaacaactatggaaagacaagaagg 31158008  T
Q  125 taatataaattctctt 140  Q
    || |||||||||||||    
T  31158007 tactataaattctctt 31157992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 31484024 - 31484077
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattg 78  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  31484024 tatcctttcatgtatttgccatcaaattttcggcccaatcaacttgttgaattg 31484077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 31149233 - 31149118
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    |||||||||| || ||||||||||| ||||| ||| ||||||||||| |||||| |||||| | | ||||   | | ||| ||||||||| | |||||||    
T  31149233 tatcctttcaagtatttgccatcaagttttctgcctaatcaacttgtcgaattgatcttgaggtatagcagtgtcaaacagctatggaaagataagaagg 31149134  T
Q  125 taatataaattctctt 140  Q
    || |||| ||||||||    
T  31149133 tactatacattctctt 31149118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 31503339 - 31503453
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    |||||||||| || |||||| |||| ||||||||| ||||||||||| || ||| |||||||||  |||| |||   |||| ||||| || |||||||||    
T  31503339 tatcctttcaagtatttgccgtcaagttttcagccaaatcaacttgttgagttgatcttgaagagtagcagcatcgaacaattatgggaagacaagaagg 31503438  T
Q  125 taatataaattctct 139  Q
    || | ||||| ||||    
T  31503439 tactctaaatcctct 31503453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 31527292 - 31527180
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    ||||||||||||| ||||||||||| |||||| ||| | |||||||| || ||| ||||| |  | |||| ||| | |||||||||| ||  || |||||    
T  31527292 tatcctttcatgtatttgccatcaagttttcaaccctaccaacttgttgagttgatcttggaagatagcagcatcaaacaactatgggaaggcacgaagg 31527193  T
Q  125 taatataaattct 137  Q
    |||| ||||||||    
T  31527192 taatctaaattct 31527180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 31491076 - 31491114
Alignment:
Q  102 acaactatggaaaaacaagaaggtaatataaattctctt 140  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  31491076 acaactatggaaagacaagaaggtactataaattctctt 31491114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 31498105 - 31498145
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatca 65  Q
    ||||||||||||| ||| ||||||||||||||||| |||||    
T  31498105 tatcctttcatgtatttaccatcaaattttcagcctaatca 31498145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 17440036 - 17440170
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    |||||||||| || ||||||| ||| |||||| |||||| |||| ||||||||| | ||| |   ||||||||||| | | |||||||||||||||||||    
T  17440036 tatcctttcaagtatttgccaacaagttttcaccccaatgaactagtagaattgattttggatgggagcaacattaaaaacctatggaaaaacaagaagg 17440135  T
Q  125 taatataaattctcttatatattattaatgtttatctt 162  Q
    ||  ||||||||||||||   | |||||||||||||||    
T  17440136 taccataaattctcttat---taattaatgtttatctt 17440170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 1502 - 1384
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    |||||||||| || | ||||||||| |||||| ||   | |||||||||||||| | |||  ||  |||  ||||| |||||||||||||||||||||||    
T  1502 tatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagctgcattaaacaactatggaaaaacaagaagg 1403  T
Q  125 taatataaattctcttata 143  Q
    || ||||||||||||||||    
T  1402 tactataaattctcttata 1384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 7248 - 7130
Alignment:
Q  25 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 124  Q
    |||||||||| || | ||||||||| |||||| ||   | |||||||||||||| | |||  ||  |||  ||||| |||||||||||||||||||||||    
T  7248 tatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagctgcattaaacaactatggaaaaacaagaagg 7149  T
Q  125 taatataaattctcttata 143  Q
    || ||||||||||||||||    
T  7148 tactataaattctcttata 7130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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