View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20747_low_2 (Length: 521)
Name: NF20747_low_2
Description: NF20747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20747_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 17110251 - 17109737
Alignment:
| Q |
1 |
tccagttcaagtaaatactatttgaatataaatctgcaccacttgatatgagatataccaaaagaaaacatgtaaatagtaggtacctgagtaattgttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17110251 |
tccagttcaagtaaatactatttgaatataaatctgcaccacttgatatgagatataccaaaagaaaacatgtaaatagtaggtacctgagtaattgttg |
17110152 |
T |
|
| Q |
101 |
ggcactatgactgttggtccctctcaggatcgtcaatcattatacattgaatatgcgcaatcct-----------ttccataaggtttcttgcatctttc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17110151 |
ggcactatgactgttggtccctctcaggatcgtcaatcattatacattgaatatgcgcaatcctctcgcaatcctttccataaggtttcttgcatctttc |
17110052 |
T |
|
| Q |
190 |
taaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgggacagtttttaagagtt |
289 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17110051 |
taaaaggaatggacagttccccgaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgggacagtttttaagagtt |
17109952 |
T |
|
| Q |
290 |
aatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggtaagagagagtggaatca |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109951 |
aatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggtaagagagagtggaatca |
17109852 |
T |
|
| Q |
390 |
acccttgattgggaaaagactccacatctgtttcttggatatacatgtaacagagagatgtatttgctggaaacgcccatttcagggagttgatgagaag |
489 |
Q |
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| T |
17109851 |
acccttgattgggaaaagactccacatctgtttcttggatatacatgtaacagagagatgtatttgctggaaacgcccatttcagggagttgatgagaag |
17109752 |
T |
|
| Q |
490 |
gttggaacatttaat |
504 |
Q |
| |
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||||||||||||||| |
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| T |
17109751 |
gttggaacatttaat |
17109737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 173 - 489
Target Start/End: Complemental strand, 16978736 - 16978420
Alignment:
| Q |
173 |
ggtttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgg |
272 |
Q |
| |
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||||||||||||| || | ||| | || ||| |||||||| || |||| |||||| |||||| |||| ||||||||||| || || | || ||||||| |
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| T |
16978736 |
ggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggcagaccctcctttggcaagcattggatgttgg |
16978637 |
T |
|
| Q |
273 |
gacagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggt |
372 |
Q |
| |
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|||| || || ||| | |||| | ||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| ||||||||| || |
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| T |
16978636 |
gacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacaaatatttagataagt |
16978537 |
T |
|
| Q |
373 |
aagagagagtggaatcaacccttgattgggaaaagactccacatctgtttcttggatatacatgtaacagagagatgtatttgctggaaacgcccatttc |
472 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||| ||||||||||| |||||| |||||||||| | ||||||||||||| | || || ||||||||| |
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| T |
16978536 |
aagagagataggaagcaacccttgattaggaaaaaactccacatctaattcttgaatatacatgttagagagagatgtattggtcggcaaagcccatttc |
16978437 |
T |
|
| Q |
473 |
agggagttgatgagaag |
489 |
Q |
| |
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|| |||||||| ||||| |
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| T |
16978436 |
agcgagttgataagaag |
16978420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 173 - 453
Target Start/End: Complemental strand, 17030608 - 17030328
Alignment:
| Q |
173 |
ggtttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgg |
272 |
Q |
| |
|
||||||||||||| || | ||| | || ||| |||||||| || |||| |||||| |||||| |||| ||||||||||| || || | || ||||||| |
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|
| T |
17030608 |
ggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggaagaccctcctttggcaagcattggatgttgg |
17030509 |
T |
|
| Q |
273 |
gacagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggt |
372 |
Q |
| |
|
|||| || || ||| | |||| | ||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| |||||||||| || |
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| T |
17030508 |
gacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacggatatttagataagt |
17030409 |
T |
|
| Q |
373 |
aagagagagtggaatcaacccttgattgggaaaagactccacatctgtttcttggatatacatgtaacagagagatgtatt |
453 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||||||||||||||||| |||||| ||||||||| | |||| |||||||| |
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| T |
17030408 |
aagagagaggggaagcaacccttgattaggaaaagactccacatctgcttcttgaatatacatggtaaagagcgatgtatt |
17030328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 173 - 453
Target Start/End: Complemental strand, 17048946 - 17048666
Alignment:
| Q |
173 |
ggtttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgg |
272 |
Q |
| |
|
||||||||||||| || | ||| | || ||| |||||||| || |||| |||||| |||||| |||| ||||||||||| || || | || ||||||| |
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| T |
17048946 |
ggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggaagaccctcctttggcaagcattggatgttgg |
17048847 |
T |
|
| Q |
273 |
gacagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggt |
372 |
Q |
| |
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|||| || || ||| | |||| | ||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| |||||||||| || |
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| T |
17048846 |
gacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacggatatttagataagt |
17048747 |
T |
|
| Q |
373 |
aagagagagtggaatcaacccttgattgggaaaagactccacatctgtttcttggatatacatgtaacagagagatgtatt |
453 |
Q |
| |
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||||||||| |||| |||||||||||| ||||||||||||||||||| |||||| ||||||||| | |||| |||||||| |
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| T |
17048746 |
aagagagaggggaagcaacccttgattaggaaaagactccacatctgcttcttgaatatacatggtaaagagcgatgtatt |
17048666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 14314008 - 14313962
Alignment:
| Q |
371 |
gtaagagagagtggaatcaacccttgattgggaaaagactccacatc |
417 |
Q |
| |
|
||||||||| |||||| ||||||||||| |||||||||||||||||| |
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|
| T |
14314008 |
gtaagagagcgtggaagcaacccttgatcgggaaaagactccacatc |
14313962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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