View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20747_low_9 (Length: 339)
Name: NF20747_low_9
Description: NF20747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20747_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 2940513 - 2940843
Alignment:
| Q |
1 |
gcaggtatgcttcctttacttatttacgataattgacctctattgactatttgactttagttaaatgatagttatgttttattgttttgcaagtttgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2940513 |
gcaggtatgcttcctttacttatttacgataattgacctctattgactatttgactttagttaaatgatagttatgttttattgttttgcaagtttgaag |
2940612 |
T |
|
| Q |
101 |
cttcatatgttctcagcaatcttctctaatccttagtttagtcactttacttacgtcaatggcctcttaatgaatttttgatacagatcactctcattag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2940613 |
cttcatatgttctcagcaatcttctctaatccttagtttagtcactttacttacgtcaatggcctcttaatgaatttttgatacagatcactctcattag |
2940712 |
T |
|
| Q |
201 |
caatgaacaaattttgcataccttggcattatccacaacttttacaagcttaaacaaaatatttacagacttttcttttggcagggtgaccctggtcaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2940713 |
caatgaacaaattttgcataccttggcattatccacaacttttacaagcttaaacaaaatatttacagacttttcttttggcagggtgaccctggtcaac |
2940812 |
T |
|
| Q |
301 |
cacacgacttggggagaaacatttctctgtg |
331 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
2940813 |
cacacgacttggggagaaacatttctatgtg |
2940843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University