View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20748_high_6 (Length: 423)
Name: NF20748_high_6
Description: NF20748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20748_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 46147964 - 46148358
Alignment:
| Q |
19 |
agcatccatcaattacaatacatcaccctagtatttagccaatcgttgagactcacgctcgtcaatagcttctgaatcaggtagcttagcatgtctagcc |
118 |
Q |
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| T |
46147964 |
agcatccatcaattacaatacatcaccctagtatttagccaatcgttgagactcacgctcgtcaatagcttctgaatcaggta---tagcatgtctagcc |
46148060 |
T |
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| Q |
119 |
attaaatcacccactcggtgggtttcataaaagttacgacgaaaataagcatgcaaattagcacatctggccaaatatttgggatagagttctttaaccc |
218 |
Q |
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| T |
46148061 |
attaaatcacccactcggtgggtttcataaaagttacgacgaaaataagcatgcaaattagcacacctggccaaatatttgggatagagttctttaaccc |
46148160 |
T |
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| Q |
219 |
ctatccataaatccctttcgaccaacaatttttgatttaaagcagcaacattcttcgcagcttcttcaacaatcttatgcaacatgtcgttcataatatc |
318 |
Q |
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| T |
46148161 |
ctacccataaatccctttcgaccaacaatttttgatttaaagcagcaacattcttcgcaacttcttcaacaatcttatgcaacatgtcgttcataatatc |
46148260 |
T |
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| Q |
319 |
gttcatcatctttatgctttcaaccgtgatatctaaatcaggatgcaccttcttcgcaactctatatatgtgcttttcaaattctacagttcttctct |
416 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46148261 |
gttcatcatctctatgctttcaaccgtgatatctaaatcaggatgcaccttcttcgcaactctatatatgtgctttttaaattctacagttcttctct |
46148358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 379
Target Start/End: Complemental strand, 47046585 - 47046455
Alignment:
| Q |
249 |
tttgatttaaagcagcaacattcttcgcagcttcttcaacaatcttatgcaacatgtcgttcataatatcgttcatcatctttatgctttcaaccgtgat |
348 |
Q |
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||||||| |||||||| |||||||||||||||| || |||||||||| ||||| || |||||| || ||||||||||| | |||| ||| |||||||| |
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| T |
47046585 |
tttgattggaagcagcagcattcttcgcagcttcgtcgacaatcttatccaacacgttgttcattatctcgttcatcatatctatggcttccaccgtgat |
47046486 |
T |
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| Q |
349 |
atctaaatcaggatgcaccttcttcgcaact |
379 |
Q |
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||||| ||||| | | ||| |||||||||| |
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| T |
47046485 |
ttctaattcagggttctcctccttcgcaact |
47046455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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