View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20748_low_10 (Length: 344)
Name: NF20748_low_10
Description: NF20748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20748_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 2591564 - 2591898
Alignment:
| Q |
1 |
gcagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattcatggatcaaaaagaaaattagaaagtcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2591564 |
gcagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattcatggatcaaaaagaaaattagaaagtcatc |
2591663 |
T |
|
| Q |
101 |
ttcttctgctcctaatttatcaacaccaactattgatcatcatcatcctcagttgatcaattatagttccattaatcaactagataattactttaccaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591664 |
ttcttctgctcctaatttatcaacaccaactattgatcatcatcatcctcagttgatcaattatagttccattaatcaactagataattactttaccaac |
2591763 |
T |
|
| Q |
201 |
caagaaaatgtaacaacaaaagaaaccttattttcatcaacatgtcctttatttatgtttgacacaagttcactgcatgaaacaacagcaacagacacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591764 |
caagaaaatgtaacaacaaaagaaaccttattttcatcaacatgtcctttatttatgtttgacacaagttcactgcatgaaacaacagcaacagacacca |
2591863 |
T |
|
| Q |
301 |
atgtaataagaccagaagtactattccatgatgat |
335 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |
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| T |
2591864 |
atgtaataagaccagaagtactattccatcatgat |
2591898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 41350461 - 41350367
Alignment:
| Q |
1 |
gcagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattcatggatcaaaaagaaaattagaaag |
95 |
Q |
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| T |
41350461 |
gcagatgggctcacattgcaagccacttacctggtagaacagacaatgaaataaagaattactggaattcttggatcaaaaagaaaataagaaag |
41350367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 5948292 - 5948223
Alignment:
| Q |
2 |
cagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattca |
71 |
Q |
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|||||||||||| ||||||| ||||| ||||| |||||||| ||||| |||||||||| |||||||||| |
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| T |
5948292 |
cagatgggctcaaattgcaaagcacttacctggaagaacagataatgagataaaaaacttttggaattca |
5948223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 5983905 - 5983836
Alignment:
| Q |
2 |
cagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattca |
71 |
Q |
| |
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|||||||||||| ||||||| ||||| ||||| |||||||| ||||| | ||||||| |||||||||| |
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| T |
5983905 |
cagatgggctcagattgcaaaacacttacctggaagaacagataatgaggtgaaaaacttttggaattca |
5983836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 53557726 - 53557763
Alignment:
| Q |
30 |
cctggtagaacagacaatgaaataaaaaactattggaa |
67 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
53557726 |
cctggaagaacagacaatgacataaaaaactattggaa |
53557763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 38707210 - 38707243
Alignment:
| Q |
33 |
ggtagaacagacaatgaaataaaaaactattgga |
66 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
38707210 |
ggtagaacggacaatgaaataaaaaactattgga |
38707243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 44676906 - 44676854
Alignment:
| Q |
15 |
attgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaa |
67 |
Q |
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||||||||||||||||| || ||||||||||| || || |||||||| ||||| |
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| T |
44676906 |
attgcaagtcacttgccaggcagaacagacaacgagattaaaaactactggaa |
44676854 |
T |
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