View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20748_low_12 (Length: 305)

Name: NF20748_low_12
Description: NF20748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20748_low_12
NF20748_low_12
[»] chr3 (10 HSPs)
chr3 (1-303)||(46404645-46404948)
chr3 (136-305)||(5004801-5004970)
chr3 (135-305)||(16975252-16975423)
chr3 (131-239)||(16475273-16475381)
chr3 (135-305)||(11967971-11968130)
chr3 (136-223)||(9104174-9104261)
chr3 (147-240)||(17542813-17542904)
chr3 (135-212)||(7337257-7337334)
chr3 (251-303)||(8730913-8730966)
chr3 (251-303)||(9082800-9082853)
[»] chr6 (9 HSPs)
chr6 (137-305)||(34636188-34636356)
chr6 (135-305)||(23260659-23260829)
chr6 (131-305)||(25005139-25005313)
chr6 (136-305)||(32450344-32450512)
chr6 (137-236)||(26182602-26182700)
chr6 (136-211)||(11166587-11166662)
chr6 (135-188)||(10751623-10751676)
chr6 (137-301)||(24992418-24992578)
chr6 (135-240)||(13777247-13777350)
[»] chr7 (11 HSPs)
chr7 (137-303)||(15874020-15874186)
chr7 (145-305)||(21491577-21491739)
chr7 (134-305)||(22077631-22077800)
chr7 (135-297)||(18367412-18367577)
chr7 (125-305)||(48576321-48576499)
chr7 (136-272)||(9993291-9993427)
chr7 (126-277)||(48654339-48654488)
chr7 (136-223)||(12196729-12196816)
chr7 (135-178)||(10289388-10289431)
chr7 (139-177)||(11036685-11036723)
chr7 (136-173)||(7503909-7503946)
[»] chr5 (4 HSPs)
chr5 (137-297)||(536731-536891)
chr5 (117-305)||(4558053-4558241)
chr5 (217-305)||(536895-536983)
chr5 (136-223)||(27026621-27026708)
[»] scaffold0413 (1 HSPs)
scaffold0413 (135-305)||(8839-9009)
[»] chr1 (9 HSPs)
chr1 (135-305)||(35762131-35762303)
chr1 (134-271)||(37667265-37667401)
chr1 (125-305)||(9537437-9537615)
chr1 (136-303)||(16074710-16074879)
chr1 (135-258)||(21264718-21264841)
chr1 (137-240)||(6835953-6836056)
chr1 (135-212)||(338059-338135)
chr1 (135-212)||(43407930-43408007)
chr1 (136-177)||(8421574-8421615)
[»] chr2 (7 HSPs)
chr2 (135-287)||(32735391-32735543)
chr2 (127-303)||(1193590-1193765)
chr2 (136-240)||(12774954-12775056)
chr2 (125-240)||(28267692-28267804)
chr2 (203-295)||(29270702-29270792)
chr2 (117-211)||(23828298-23828392)
chr2 (135-212)||(40447432-40447508)
[»] chr4 (3 HSPs)
chr4 (136-305)||(28969264-28969431)
chr4 (169-305)||(49499045-49499181)
chr4 (135-223)||(40458905-40458992)
[»] scaffold1838 (1 HSPs)
scaffold1838 (181-305)||(221-343)
[»] scaffold0120 (1 HSPs)
scaffold0120 (136-211)||(2645-2720)
[»] chr8 (5 HSPs)
chr8 (135-240)||(22816487-22816590)
chr8 (203-303)||(35839168-35839268)
chr8 (134-211)||(20264999-20265076)
chr8 (134-211)||(21051628-21051705)
chr8 (138-223)||(40841568-40841652)
[»] scaffold0002 (1 HSPs)
scaffold0002 (124-211)||(356884-356971)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 46404948 - 46404645
Alignment:
Q  1 gtcccctttgattgagaaaagaattcgtagaacagttaaatagacattgtcatagcggtttcattgggtatggactgagcggagtacagactgatgcatg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404948 gtcccctttgattgagaaaagaattcgtagaacagttagatagacattgtcatagcggtttcattgggtatggactgagcggagtacagactgatgcatg 46404849  T
Q  101 tgcattgagggtttcactaggaggtaaagcgtttgaggtaagggcttttt-ccccatacgttcttactaagtactaggattatgttatgaattaaaggta 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46404848 tgcattgagggtttcactaggaggtaaagcgtttgaggtaagggcttttttccccatacgttcttactaagtactaggattatgttatgaattagaggta 46404749  T
Q  200 gagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttata 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404748 gagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttata 46404649  T
Q  300 tgat 303  Q
    ||||    
T  46404648 tgat 46404645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 136 - 305
Target Start/End: Complemental strand, 5004970 - 5004801
Alignment:
Q  136 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  5004970 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtcttttgaaaagaacaaaacaactaa 5004871  T
Q  236 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 305  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004870 aatatgaatttatatggtgaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 5004801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 135 - 305
Target Start/End: Original strand, 16975252 - 16975423
Alignment:
Q  135 gaggtaagggctttttcccc-atacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 233  Q
    ||||||||||||||| |||| |||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  16975252 gaggtaagggcttttccccccatacattcttaataagtactaggattatgttatgaattagaggtagagattcttgtttgttgaaaagaacaaaacaact 16975351  T
Q  234 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16975352 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 16975423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 131 - 239
Target Start/End: Original strand, 16475273 - 16475381
Alignment:
Q  131 gtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaaca 230  Q
    |||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16475273 gtttaaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaaca 16475372  T
Q  231 actaaaata 239  Q
    |||||||||    
T  16475373 actaaaata 16475381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 135 - 305
Target Start/End: Complemental strand, 11968130 - 11967971
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa--caaaacaac 232  Q
    |||||||||| |||||||| |||||| | |||||||||||||||| |||||||||      |||||||||||||      |||||||||  ||||| | |    
T  11968130 gaggtaagggttttttccc-atacgtccatactaagtactaggatgatgttatga------ggtagagattctt------tgaaaagaagacaaaaaatc 11968044  T
Q  233 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 305  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11968043 taaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatacgatgt 11967971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 9104174 - 9104261
Alignment:
Q  136 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 223  Q
    ||||||||| |||||||||||||||| |||||||||  ||||| | |||||| || ||  |||||  |||||||||| ||||||||||    
T  9104174 aggtaagggttttttccccatacgtttttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 9104261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 17542904 - 17542813
Alignment:
Q  147 ttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatat 240  Q
    |||||||||||||||||||||||||  ||||| | |||||| || ||  |||||  |||||||||| |||||||||  ||||||| ||||||||    
T  17542904 ttttccccatacgttcttactaagttttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaaga--aaaacaattaaaatat 17542813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 7337334 - 7337257
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 212  Q
    |||||||||||||||||||||||||| | |||||||| |||||| | ||| || || ||| |||||| || |||||||    
T  7337334 gaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggtagaaatgcttgtct 7337257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 8730913 - 8730966
Alignment:
Q  251 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 303  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  8730913 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 8730966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 9082800 - 9082853
Alignment:
Q  251 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 303  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  9082800 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 9082853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 137 - 305
Target Start/End: Original strand, 34636188 - 34636356
Alignment:
Q  137 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34636188 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 34636287  T
Q  237 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636288 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 34636356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 135 - 305
Target Start/End: Complemental strand, 23260829 - 23260659
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 234  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  23260829 gaggtaagggctttttccccatacgttcttactaagtattaggattatgttatgaattagaggtagagattcttgtctcttgaaaagaacaaaacaacta 23260730  T
Q  235 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 305  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23260729 aaatatgaattcatatggtaaaatttagccttttataaaagttattagtttaattatattttatatgatgt 23260659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 131 - 305
Target Start/End: Original strand, 25005139 - 25005313
Alignment:
Q  131 gtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaaca 230  Q
    |||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25005139 gtttaaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaaca 25005238  T
Q  231 actaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 305  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25005239 actaaaataagaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 25005313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 136 - 305
Target Start/End: Complemental strand, 32450512 - 32450344
Alignment:
Q  136 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 235  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32450512 aggtaagggctttt-ccccgtacgttcttactaagtactaggattgtgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 32450414  T
Q  236 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 305  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  32450413 aatatgaattcatatggtaaattttaactttttataaaagttattagtttaattatattttatatgatgt 32450344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 26182700 - 26182602
Alignment:
Q  137 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 236  Q
    ||||||||||||||||||||| || | ||||||||| |||||| ||||||||||||| || ||||||||||||| |||||| ||||| ||||||||||||    
T  26182700 ggtaagggctttttccccatatgtccatactaagtattaggatgatgttatgaattagagttagagattcttgtatgttgagaagaa-aaaacaactaaa 26182602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 11166662 - 11166587
Alignment:
Q  136 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 211  Q
    ||||||||||||||||||||||||||||||||||||  ||||||  | ||||||| ||  |||||||||| |||||    
T  11166662 aggtaagggctttttccccatacgttcttactaagtgttaggatcttattatgaaatagtggtagagatttttgtc 11166587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 10751676 - 10751623
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatg 188  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||    
T  10751676 gaggtaagggccttttccccatacattcttactaagtactatgataatgttatg 10751623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 301
Target Start/End: Original strand, 24992418 - 24992578
Alignment:
Q  137 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 236  Q
    ||||||||||||||||| ||| ||   || |||||||||||  |||||||||||||| | ||||| |||||||| | |||||||||  ||||||| ||||    
T  24992418 ggtaagggctttttccc-atatgtctatattaagtactagggatatgttatgaattataagtagaaattcttgt-ttttgaaaaga--aaaacaattaaa 24992513  T
Q  237 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 301  Q
    ||||   || |  ||||||||||||  ||||||||||| | |||| ||||||||  |||||||||    
T  24992514 atatttctttacgtggtaaaatttattcttttataaaactgattattttaattaagttttatatg 24992578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 13777350 - 13777247
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 234  Q
    ||||||||| |||||||||| ||||| | || ||| ||||||||| ||||| ||||||| | ||| | |||||| ||| ||| ||||||  |||||||||    
T  13777350 gaggtaaggactttttccccgtacgtccataataaatactaggatgatgttgtgaattagaagtacaaattcttatcttttggaaagaa--aaacaacta 13777253  T
Q  235 aaatat 240  Q
    ||||||    
T  13777252 aaatat 13777247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 15874186 - 15874020
Alignment:
Q  137 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  15874186 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaactaaa 15874087  T
Q  237 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgat 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15874086 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgat 15874020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 145 - 305
Target Start/End: Complemental strand, 21491739 - 21491577
Alignment:
Q  145 ctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa--caaaacaactaaaatatga 242  Q
    |||||| ||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||  ||||| |||||||||||||    
T  21491739 cttttttcccatacgtccatactaagtactaggatgatgttatgaattagaggtagagattcttgtcggttgaaaagaagacaaaaaaactaaaatatga 21491640  T
Q  243 attcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 305  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21491639 atttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 21491577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 134 - 305
Target Start/End: Original strand, 22077631 - 22077800
Alignment:
Q  134 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 233  Q
    ||||||||||||||||| |||||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| | ||||  |||||||||    
T  22077631 tgaggtaagggcttttttcccatatgttcatactaagtactaggatgatgttatgaattagaggtagagattcttgtctgttaagaaga--aaaacaact 22077728  T
Q  234 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 305  Q
    ||||||| |||| |||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  22077729 aaaatataaatttatatggtaaaatttaaccatttcaaaaagttattagtttaattatattttatatgatgt 22077800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 135 - 297
Target Start/End: Complemental strand, 18367577 - 18367412
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac-aaaac--aa 231  Q
    ||||||||||||||||||| |||||| | || |||| |||||||  |||||||||||||||||||||||||||||| ||||||||||||  |||||  ||    
T  18367577 gaggtaagggctttttccctatacgtccataataagaactaggacgatgttatgaattaaaggtagagattcttgtttgttgaaaagaaagaaaaccaaa 18367478  T
Q  232 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 297  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18367477 ttaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 18367412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 125 - 305
Target Start/End: Original strand, 48576321 - 48576499
Alignment:
Q  125 taaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac 224  Q
    |||||||| | ||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||| |||||||||||||| || ||| |||||       
T  48576321 taaagcgtataaggtaagggctttttccccatacgtccatactaagtactgggataatgttatgaattagaggtagagattcttatccgttaaaaag--- 48576417  T
Q  225 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgatgt 305  Q
    |||| || ||||||||||||| ||||||||||||||||  | |||| ||||||||||| ||||||||||| |||||||||||    
T  48576418 aaaataattaaaatatgaatttatatggtaaaatttaatatcttattaaagttattagttttaattatatattatatgatgt 48576499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 272
Target Start/End: Original strand, 9993291 - 9993427
Alignment:
Q  136 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 235  Q
    |||||||||||||||||||| ||||||||||||||| |||||  | |||||| || ||  ||||   |||||||||| |||||||||| ||||||| |||    
T  9993291 aggtaagggctttttccccacacgttcttactaagtgctagggctttgttattaaataggggtaacaattcttgtcttttgaaaagaagaaaacaattaa 9993390  T
Q  236 aatatgaattcatatggtaaaatttaaccttttataa 272  Q
    |||||  ||| |||||||||||| |||  ||||||||    
T  9993391 aatatttatttatatggtaaaatctaatattttataa 9993427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 277
Target Start/End: Complemental strand, 48654488 - 48654339
Alignment:
Q  126 aaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaaca 225  Q
    ||||| || |||||||||| ||||||||||||||| | |||||||||||||||| ||||| ||||||| | ||| | |||||||||| ||| |||||  |    
T  48654488 aaagctttcgaggtaagggttttttccccatacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttgtcttttggaaaga--a 48654391  T
Q  226 aaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagtt 277  Q
    |||||||||||||||  ||| |  |||||| |||||||  |||| |||||||    
T  48654390 aaacaactaaaatatatatttaggtggtaatatttaacagtttacaaaagtt 48654339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 12196816 - 12196729
Alignment:
Q  136 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 223  Q
    ||||||||||||||||||||||| |||||||||||| | |||| |||||||| || ||  |||||  |||||||||| || |||||||    
T  12196816 aggtaagggctttttccccatacattcttactaagtgcaaggactatgttattaaatagtggtagcaattcttgtcttttaaaaagaa 12196729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 10289431 - 10289388
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactagga 178  Q
    |||||||||||||||||||||||||| | |||||||| ||||||    
T  10289431 gaggtaagggctttttccccatacgtccatactaagtgctagga 10289388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 11036723 - 11036685
Alignment:
Q  139 taagggctttttccccatacgttcttactaagtactagg 177  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  11036723 taagggctttttccccacacgttcttactaagtgctagg 11036685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 7503909 - 7503946
Alignment:
Q  136 aggtaagggctttttccccatacgttcttactaagtac 173  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  7503909 aggtaagggctttttccccatacgtccatactaagtac 7503946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 137 - 297
Target Start/End: Original strand, 536731 - 536891
Alignment:
Q  137 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  536731 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 536830  T
Q  237 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536831 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 536891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 117 - 305
Target Start/End: Complemental strand, 4558241 - 4558053
Alignment:
Q  117 ctaggaggtaaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttg 216  Q
    |||||||||||| |||  ||||||||||||||||||| ||||||   ||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||    
T  4558241 ctaggaggtaaaacgtacgaggtaagggctttttccc-atacgtctatactaagtattaggatgatgttatgatttagaggtagagattcttgtctgttg 4558143  T
Q  217 aaaaga-acaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 305  Q
    | |||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  4558142 agaagagagaaaaaaactaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaatcatattttatataatgt 4558053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 536895 - 536983
Alignment:
Q  217 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536895 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 536983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 27026621 - 27026708
Alignment:
Q  136 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 223  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| |||||| || ||  ||||   |||||||||| ||||||||||    
T  27026621 aggtaagggctttttccccatacgtttttactaagtgctaggattgtgttattaaatagtggtaacaattcttgtcttttgaaaagaa 27026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 135 - 305
Target Start/End: Original strand, 8839 - 9009
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||    
T  8839 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtataaattcttgtctgttgaaaagaacaaaacaacta 8938  T
Q  235 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 305  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8939 aaatatgaattcacatggtaaaatttaaccttttataacagttattagtttaattatattttatatgatgt 9009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 135 - 305
Target Start/End: Complemental strand, 35762303 - 35762131
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 234  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  35762303 gaggtaagggctttttccccatacgtccatactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaacta 35762204  T
Q  235 aaatatgaattcatatggtaaaatttaaccttttat--aaaagttattagtttaattatattttatatgatgt 305  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  35762203 aaatatgaatttatatggtaaaatttaaccttttataaaaaagttattagtttaactatattttatatgatgt 35762131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 134 - 271
Target Start/End: Complemental strand, 37667401 - 37667265
Alignment:
Q  134 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 233  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37667401 tgaggtaagg-ctttttccccatacgttcttactaagtaataggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 37667303  T
Q  234 aaaatatgaattcatatggtaaaatttaaccttttata 271  Q
    |||||||||||||||||| |||||||||||||||||||    
T  37667302 aaaatatgaattcatatgataaaatttaaccttttata 37667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 125 - 305
Target Start/End: Complemental strand, 9537615 - 9537437
Alignment:
Q  125 taaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac 224  Q
    |||||||| | | |||||||||||| || ||||||| | |||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||     
T  9537615 taaagcgtatcaagtaagggcttttacctcatacgtccatactgagtactaggatgatgttatgaattagaggtatagattcttgtctgttgagaagaa- 9537517  T
Q  225 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 305  Q
     |||||| |||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9537516 -aaacaagtaaaatataaatttatattgtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 9537437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 136 - 303
Target Start/End: Original strand, 16074710 - 16074879
Alignment:
Q  136 aggtaagggctttttccccatacgttcttactaagtactaggattatg---ttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaac 232  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||| |||   |||||||||| || |||||||| ||||| ||| |||||||  ||||||     
T  16074710 aggtaagggcttttttcccatacgttcatactaagtactgggatgatgatattatgaattagagatagagatttttgtccgttaaaaagaa--aaacaat 16074807  T
Q  233 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgat 303  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  16074808 taaaatatgaattcatatgttaaaatttaatcttttataaaagttattagatttaattatattttatatgat 16074879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 258
Target Start/End: Complemental strand, 21264841 - 21264718
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||  | ||| || ||  |  |||||  |||||||||| |||||||||| ||||||| ||    
T  21264841 gaggtaagggctttttccccatacgttcttactaagtgctagggctttgtgattaaacaggggtagcaattcttgtcttttgaaaagaagaaaacaatta 21264742  T
Q  235 aaatatgaattcatatggtaaaat 258  Q
    ||||||  ||| | ||||||||||    
T  21264741 aaatatttatttacatggtaaaat 21264718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 6835953 - 6836056
Alignment:
Q  137 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 236  Q
    ||||||||||||||||||||||||||||||||||| |||||  | | | || || ||  |||||  |||||||||| |||||||||| ||||||| ||||    
T  6835953 ggtaagggctttttccccatacgttcttactaagtgctagggctttatgattaaataggggtagcaattcttgtcttttgaaaagaagaaaacaattaaa 6836052  T
Q  237 atat 240  Q
    ||||    
T  6836053 atat 6836056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 338059 - 338135
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 212  Q
    |||||||||||||||||||||||||| | |||||||| ||| || |||||||| || || ||||||  ||||||||||    
T  338059 gaggtaagggctttttccccatacgtccatactaagtgcta-gactatgttattaagtagaggtagtaattcttgtct 338135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 43408007 - 43407930
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 212  Q
    |||||||||||||||||||||||||| | |||||||| |||||| | ||| || || ||| |||||| || |||||||    
T  43408007 gaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggtagaaatgcttgtct 43407930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 8421574 - 8421615
Alignment:
Q  136 aggtaagggctttttccccatacgttcttactaagtactagg 177  Q
    ||||||||||||||||||||||||| | |||||||| |||||    
T  8421574 aggtaagggctttttccccatacgtacatactaagtgctagg 8421615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 135 - 287
Target Start/End: Complemental strand, 32735543 - 32735391
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32735543 gaggtaagggctttttccccatacgttcttactaagtgctaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 32735444  T
Q  235 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaa 287  Q
    ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||    
T  32735443 aaatatgcattcatatggtgaaatttaaccttttataaaagatattagtttaa 32735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 303
Target Start/End: Original strand, 1193590 - 1193765
Alignment:
Q  127 aagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaa 226  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||||| |||| | | |||||| ||  |  |||||  |||||||||| |||||||||| ||    
T  1193590 aagcgttcgaggtaagggctttttccc-ataagttcttactaagtgctagtactttgttattaaacaggggtagcaattcttgtcttttgaaaagaagaa 1193688  T
Q  227 aacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgat 303  Q
    ||||| ||||||||  ||| | |||||||| | |||  |||||||| ||| |||| |||||||   |||||||||||    
T  1193689 aacaattaaaatatttatttacatggtaaagtctaatattttataagagtgattattttaattgagttttatatgat 1193765  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 12775056 - 12774954
Alignment:
Q  136 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 235  Q
    ||||||||||||||||||||||||| | ||| |||||||||||| ||||| ||||||| | ||| | |||||| ||| ||| |||||  |||||||||||    
T  12775056 aggtaagggctttttccccatacgtccatacaaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttggaaaga--aaaacaactaa 12774959  T
Q  236 aatat 240  Q
    |||||    
T  12774958 aatat 12774954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 28267804 - 28267692
Alignment:
Q  125 taaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac 224  Q
    |||||||| | ||||||||| |||||||| |||||| | |||||||||||||||| ||||| ||||||| | ||| | |||||| ||| |||||||||      
T  28267804 taaagcgtataaggtaagggttttttccc-atacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttgaaaaga-- 28267708  T
Q  225 aaaacaactaaaatat 240  Q
    ||||||||||||||||    
T  28267707 aaaacaactaaaatat 28267692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 29270702 - 29270792
Alignment:
Q  203 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattt 295  Q
    |||||||||| ||||||||||  |||||| ||||||||| | | | || |||||||||||  |||||||||| |||||| |||||||||||||    
T  29270702 attcttgtcttttgaaaagaa--aaacaattaaaatatgtagttacatagtaaaatttaatattttataaaaattattattttaattatattt 29270792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 23828392 - 23828298
Alignment:
Q  117 ctaggaggtaaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 211  Q
    |||||| ||||||||| | ||||||||  ||||| |||| |||||||||||||||  ||||| | ||||||||| ||  |||||| |||||||||    
T  23828392 ctaggaagtaaagcgtctaaggtaaggatttttttcccacacgttcttactaagtgttaggactttgttatgaaatagtggtagaaattcttgtc 23828298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 40447432 - 40447508
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 212  Q
    |||||||||||||||||||||||||| | |||||||| ||| || |||||||| || || ||||||  ||||||||||    
T  40447432 gaggtaagggctttttccccatacgtccatactaagtgcta-gactatgttattaagtagaggtagtaattcttgtct 40447508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 136 - 305
Target Start/End: Complemental strand, 28969431 - 28969264
Alignment:
Q  136 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 235  Q
    ||||||||| ||||||| ||||||| | |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||  ||||||||||    
T  28969431 aggtaagggttttttcctcatacgtccatactaagtactaggatgatgttatgaattagaggtagaaattcttgtctgttgagaagaa--aaacaactaa 28969334  T
Q  236 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 305  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  28969333 aatattaatttatatggtaaaatttaacattttataaaagttattagtttaattatattctatatgatgt 28969264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 49499045 - 49499181
Alignment:
Q  169 agtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaacctttt 268  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||| |||| |||||||||||||||| |||| |||||||||||||||||    
T  49499045 agtactaggatcatgttatgaattagaggtggagattcttgtctgttgagaagaaaaaaaaaactaaaatatgaatttatatagtaaaatttaacctttt 49499144  T
Q  269 ataaaagttattagtttaattatattttatatgatgt 305  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  49499145 ataaaaattattagtttaattatattttatataatgt 49499181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 40458905 - 40458992
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 223  Q
    |||||||||||||||||||||||||| | |||||||| ||| || | |||||| || || ||||||  |||||||||| || |||||||    
T  40458905 gaggtaagggctttttccccatacgtccatactaagtgcta-gactgtgttattaagtagaggtagcaattcttgtcttttaaaaagaa 40458992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 181 - 305
Target Start/End: Original strand, 221 - 343
Alignment:
Q  181 atgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttatt 280  Q
    ||||||||||||| || ||||||||||||| |||| |||||||  ||| || |||||||| |||  ||||||||||||||||||||||||||||||||||    
T  221 atgttatgaattagagatagagattcttgtttgttaaaaagaa--aaataattaaaatataaatctatatggtaaaatttaaccttttataaaagttatt 318  T
Q  281 agtttaattatattttatatgatgt 305  Q
    |||||||||||||||||||||||||    
T  319 agtttaattatattttatatgatgt 343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 2720 - 2645
Alignment:
Q  136 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 211  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||| || ||  |||||| |||||||||    
T  2720 aggtaagggctttttccccatacgttcttactaagtgctaggactttgttataaaatagtggtagaaattcttgtc 2645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 22816590 - 22816487
Alignment:
Q  135 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 234  Q
    |||||||||||||||||||||||||||||| ||||||  ||||| | |||||| || ||  ||| |  |||||||||| |||||||||  ||||||| ||    
T  22816590 gaggtaagggctttttccccatacgttcttgctaagtgttaggactgtgttattaaatagtggttgcaattcttgtctcttgaaaaga--aaaacaatta 22816493  T
Q  235 aaatat 240  Q
    ||||||    
T  22816492 aaatat 22816487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 303
Target Start/End: Original strand, 35839168 - 35839268
Alignment:
Q  203 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatga 302  Q
    |||||||||| |||||||||| ||||||| ||||||||  ||| | |||||||||| |||  |||||||| ||| |||| |||||||   ||||||||||    
T  35839168 attcttgtcttttgaaaagaagaaaacaattaaaatatttatttacatggtaaaatctaatattttataagagtgattattttaattgagttttatatga 35839267  T
Q  303 t 303  Q
    |    
T  35839268 t 35839268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 20265076 - 20264999
Alignment:
Q  134 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 211  Q
    ||||||||||| |||||||| ||||||||||| ||||| |||||||  |||| |||| ||  |||||| |||||||||    
T  20265076 tgaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 20264999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 21051705 - 21051628
Alignment:
Q  134 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 211  Q
    ||||||||||| |||||||| ||||||||||| ||||| |||||||  |||| |||| ||  |||||| |||||||||    
T  21051705 tgaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 21051628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 40841652 - 40841568
Alignment:
Q  138 gtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 223  Q
    |||||||||||||||| |||||||||||||||||  ||||| | |||||| || ||  |||||  |||||||||| ||||||||||    
T  40841652 gtaagggctttttccc-atacgttcttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 40841568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 356971 - 356884
Alignment:
Q  124 gtaaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 211  Q
    ||||||||| | ||||||||  |||||||||||||||||||||||||| ||||||   |||| |||| ||  |||||| |||||||||    
T  356971 gtaaagcgtctaaggtaaggattttttccccatacgttcttactaagtgctaggaccgtgttttgaagtagtggtagaaattcttgtc 356884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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