View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20748_low_14 (Length: 284)
Name: NF20748_low_14
Description: NF20748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20748_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 595302 - 595032
Alignment:
| Q |
1 |
agctagcttcctatcatatctcttaatttatatgcaccagagagagggcgacagacaatccatccaagatttatacgttcatttgagtacttagtcgact |
100 |
Q |
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| T |
595302 |
agctagcttcctatcatatctcttaatttatatgcaccagagagagggcgacagacaatccatccaagatttatacgttcatttgagtacttagtcgact |
595203 |
T |
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| Q |
101 |
acttatgaacccgtgataagttgtaaaagcaaaactgcaagggtacaaatctgcaaattaatgatgaactttggaaaatattcttgctttactctcattt |
200 |
Q |
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| T |
595202 |
acttatgaacccgtgataagttgtaaaagcaaaactgcaatggtacaaatctgcaaattaatgatgaactttggaaaatattcttgctttactctcattt |
595103 |
T |
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| Q |
201 |
cagaaaacatagcccatatacatgaatcctagaatgcaaatccttaaagaacaataagaaaaatattattc |
271 |
Q |
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| T |
595102 |
cagaaaacatagcccatatacatgaatcctagaatgcaaatccttaaagaacaataagaaaaatattattc |
595032 |
T |
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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 164 - 263
Target Start/End: Original strand, 28168753 - 28168852
Alignment:
| Q |
164 |
atgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaatccttaaagaacaataagaaaaa |
263 |
Q |
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| T |
28168753 |
atgaactttggaaaatgttcttgcttcagtctcatttccaaaaacatagtccatatacctgaatcccagaatgcaaatccttaaagatcaataagaaaaa |
28168852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 22476977 - 22476878
Alignment:
| Q |
164 |
atgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaatccttaaagaacaataagaaaaa |
263 |
Q |
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| T |
22476977 |
atgaactttcgaaaatgtccgtgcttcagtctcatttccaaatacatagtccatatacctgaatcccagaatgcaaacccttaaagatcaataagaaaaa |
22476878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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