View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20748_low_19 (Length: 242)
Name: NF20748_low_19
Description: NF20748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20748_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 42158761 - 42158986
Alignment:
| Q |
1 |
atggtttgacaaaccacctgtcgcagtaagtcagaccactaatttctaagaaatctatgtggtttgacgaaccaaagtatatatggtccgtccaaccact |
100 |
Q |
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| T |
42158761 |
atggtttgacaaaccacctatcgtagtaagtcagaccactaatttctaagaaatctatgtggtttgacgaaccacagtatatatggtccgttcaaccact |
42158860 |
T |
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| Q |
101 |
agttggttgttcgatataaaatccaaatctaaagataaagagacaaacctgtcttgtctgtctctaagtttcctaagaaacttctcattgtcttcttcaa |
200 |
Q |
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| T |
42158861 |
agttggttgtttgatataaaatccaaatctaaagataaagagacaaacctgtcttgtctgtctctaagtttcctaagaaacttctcattgtcttcttcaa |
42158960 |
T |
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| Q |
201 |
caatcttgaggatactatccaacaag |
226 |
Q |
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| T |
42158961 |
caatcttgaggatactatccaacaag |
42158986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 42146585 - 42146691
Alignment:
| Q |
120 |
aatccaaatctaaagataaagagacaaacctgtcttgtctgtctctaagtttcctaagaaacttctcattgtcttcttcaacaatcttgaggatactatc |
219 |
Q |
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|||| |||| ||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||| ||||| ||||| |
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| T |
42146585 |
aatcaaaatataaagataaagagacaaacctgtcttgtcggtctctaagttttctgagaaacttctcattgtcttcttcgacaatcttaaggatgctatc |
42146684 |
T |
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| Q |
220 |
caacaag |
226 |
Q |
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||||||| |
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| T |
42146685 |
caacaag |
42146691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 42179878 - 42179960
Alignment:
| Q |
144 |
caaacctgtcttgtctgtctctaagtttcctaagaaacttctcattgtcttcttcaacaatcttgaggatactatccaacaag |
226 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
42179878 |
caaacctgtcttgtctgtctctaagttttcttagaaacttctcattgtcttcttcaacaatcttaaggatgctatccaacaag |
42179960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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