View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20748_low_2 (Length: 703)
Name: NF20748_low_2
Description: NF20748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20748_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 618; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 20 - 685
Target Start/End: Original strand, 10676603 - 10677268
Alignment:
| Q |
20 |
cttgtgaccatagaagtgttgctcgttacaaactaatgtcttcatatatagttcagtacggtagaagtgggggtgccacctttctcgttcgtacaactct |
119 |
Q |
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| T |
10676603 |
cttgtgaccatagaagtgttgctcgttacaaactaatgtcttcatatatagttcagtacggtagaagtgggggtgccacctttctcgttcgtacaactct |
10676702 |
T |
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| Q |
120 |
gatgatgaaggcgacgacatgaataaggaacaataatgtgtatgcaatatattttaatgattctccccaattgcagtgatctggtatcaacatcaagacc |
219 |
Q |
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| T |
10676703 |
gatgatgaaggcgacgacatgaataaggaacaataatgtgtatgcaatatattttaatgattctccccaattgctgtgatctggtagcaacatcaagacc |
10676802 |
T |
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| Q |
220 |
aaagaaatcaatgagagggaaccaaagacttccataagagtatttttagttctaaagggtatagaaaatttaagcccaacccaaagggtaaagtaatagg |
319 |
Q |
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| T |
10676803 |
aaagaaatcaatgagagggaaccaaagacttccataagagtatttttagttctaaagggtatagaaaatttaagcccaacccaaagggtcaagtaatagg |
10676902 |
T |
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| Q |
320 |
caagatagctagtaatggatagaaaggatgtcttaggatgaatctgaaatggagcccgactttgagggttccttaattggaggaaaccaaggagaacata |
419 |
Q |
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| T |
10676903 |
caagatagctagcaatggatagaaaggatgtcttaggatgaatctgaaatggagccggactttgagggttccttaattggaggaaaccaaggagaacata |
10677002 |
T |
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| Q |
420 |
aaaggaaaaagcaactaggttgtgcaaatcagaattgttttcctttgttcttgagagaagatcaagattgttatcttctttctttcttgctatttggacg |
519 |
Q |
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| T |
10677003 |
aaaggaaaaagcaactaggttgtgcaaatcagaattgttttcttttgttcttgagagaagatcaagattgttatcttctttctttcttgctatttggacg |
10677102 |
T |
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| Q |
520 |
ttacttaatactatataattgaaaacaacttgagtaggtaatgatctcctcaaatggggtcttcctctactcacataaacatccatgttataagaggnnn |
619 |
Q |
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| T |
10677103 |
ttacttaatactatataattgaaaacaacttgagtaggtaatgatctcctcaaatggggtcttcctctactcacataaacatccatgttataagaggttt |
10677202 |
T |
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| Q |
620 |
nnnnngtgacaagaaaaagagatcgaatttaatgaccttggctaggtattatatatacaagctgat |
685 |
Q |
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| T |
10677203 |
tttttgtgacaagaaaaagagatcgaatttaatgaccttggctaggtattatatatacaagctgat |
10677268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 495 - 605
Target Start/End: Original strand, 10673863 - 10673973
Alignment:
| Q |
495 |
ttctttctttcttgctatttggacgttacttaatactatataattgaaaacaacttgagtaggtaatgatctcctcaaatggggtcttcctctactcaca |
594 |
Q |
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| T |
10673863 |
ttcttgctttctagttatttggacgttacttaatactatatgattgaaaacaatttgagtatgtaacgatctcctcaaatggggtcttcctctactcaca |
10673962 |
T |
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| Q |
595 |
taaacatccat |
605 |
Q |
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| T |
10673963 |
tcaacatccat |
10673973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 10673524 - 10673738
Alignment:
| Q |
21 |
ttgtgaccatagaagtgttgctcgttacaaactaatgtcttcatatatagttcagtacggtagaagtgggggtgccacctttctcgtt---cgtacaact |
117 |
Q |
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| T |
10673524 |
ttgtgaccatagaagtgttgcaccttacaaactaatgccagcttaa----ttctgtacggtagaagtggaggtgccacccttctcctcagacgtgcggct |
10673619 |
T |
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| Q |
118 |
ctgatgatgaaggcgacgacatgaataaggaacaataatgtgtatgcaatatattttaatgattctccccaattgcagtgatctg---gtatcaacatca |
214 |
Q |
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| T |
10673620 |
ctgataatgaatgtgacgacatgaataaggaacaataatgtgtatgcaatatattttaatgattctccataattattgtgatatggtagtagcaacatca |
10673719 |
T |
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| Q |
215 |
agaccaaagaaatcaatga |
233 |
Q |
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| T |
10673720 |
agaccaaagaaatcaatga |
10673738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 260
Target Start/End: Original strand, 10602379 - 10602517
Alignment:
| Q |
119 |
tgatgatgaaggcgacgacatgaataaggaacaataatgtgtatgcaatatattttaatgattctccccaattgcagtgatctggtatcaacatcaagac |
218 |
Q |
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| T |
10602379 |
tgatgataaatgccacaacatgaataagaaaccatattgtatatgtaatgcatttcaatgattctccccaagtg---tgatttggtagcaacattaacac |
10602475 |
T |
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| Q |
219 |
caaagaaatcaatgagagggaaccaaagacttccataagagt |
260 |
Q |
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| T |
10602476 |
caaagaaatcaatgaaagtgaaccaaaaatttccataagagt |
10602517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 460
Target Start/End: Original strand, 10673737 - 10673860
Alignment:
| Q |
337 |
gatagaaaggatgtcttaggatgaatctgaaatggagcccgactttgagggttccttaattggaggaaaccaaggagaacataaaaggaaaaagcaacta |
436 |
Q |
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|||| |||||| ||||||||||||| ||||||||||| | ||| |||| || ||||||||||||||||| ||||||||| || || |||| ||| | |
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| T |
10673737 |
gatataaaggacgtcttaggatgaacctgaaatggagtggggttttaagggctcattaattggaggaaaccagggagaacatgaatggcaaaactaacaa |
10673836 |
T |
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| Q |
437 |
ggttgtgcaaatcagaattgtttt |
460 |
Q |
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| T |
10673837 |
gggtgtgcaaatcaagattgtttt |
10673860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 260
Target Start/End: Original strand, 10613270 - 10613411
Alignment:
| Q |
119 |
tgatgatgaaggcgacgacatgaataaggaacaataatgtgtatgcaatatattttaatgattctccccaattgcagtgatctggtatcaacatcaagac |
218 |
Q |
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| T |
10613270 |
tgatgataaaggctacgacatggctaagcaaccatattgtgtatgcaatatatttcaatggttccccccaataagtgtgatttggtaacaacattaggac |
10613369 |
T |
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| Q |
219 |
caaagaaatcaatgagagggaaccaaagacttccataagagt |
260 |
Q |
| |
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| T |
10613370 |
catggaaataaatgaaagcgacccaaagacttctaaaagagt |
10613411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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