View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20748_low_3 (Length: 664)
Name: NF20748_low_3
Description: NF20748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20748_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 372 - 648
Target Start/End: Complemental strand, 35800120 - 35799844
Alignment:
| Q |
372 |
caattaaagttgatagataactatgtttctatttgtgttggatattctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatgc |
471 |
Q |
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| T |
35800120 |
caattaaagttgatagataactatgtttctgtttgtgttggatattctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatgc |
35800021 |
T |
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| Q |
472 |
gggctatggtttgctatttcgaattgaatatctagaaatcatctcttggtgaaacgttgttaagaaaaccctatgccattaaattgcttattcttgtatg |
571 |
Q |
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| T |
35800020 |
ggtctacggtttgctatttcgaattgaatatctagaaatcatctcttggtgaaacgttgttaagaaaaccctatgccattaaattgcttattcttgtatg |
35799921 |
T |
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| Q |
572 |
cagctaaattgtgtatctttttgtacatgaatctgttttgattatggttatatttgatctgaaaatgtcttgatttt |
648 |
Q |
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| T |
35799920 |
cagctaaattgtgtatctttttgtacatgaatctgttttgattatggttatatttgatctgaaaatgtcttgatttt |
35799844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 171 - 315
Target Start/End: Complemental strand, 35800320 - 35800176
Alignment:
| Q |
171 |
gatgcatagtagaaaaagtgggtgaatgttagaaattagaattgataaatatatcatgatattgtgaatagttgctgtcacatgcaggttgatgcagcac |
270 |
Q |
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| T |
35800320 |
gatgcatagtagaaaaagtgggtgaatgttagaaattagaattgataaatatatcatgatattgtgaatagttgctgtcacatgcaggttgatgcagcac |
35800221 |
T |
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| Q |
271 |
aattgtgttgtggagacatcaaatccaaaccttgattgttaccac |
315 |
Q |
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| T |
35800220 |
aattgtgttgtggagacatcaaaaccaaaccttgattgtgaccac |
35800176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 35800479 - 35800354
Alignment:
| Q |
11 |
caaaggatcagtaaccatcatcaagtgggtcagtggagatcctcctcttcatcctataacggaaaaccacctttaggttcgttcgttcttcagtttttgc |
110 |
Q |
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| T |
35800479 |
caaaggatcagtaaccatcatcaagtgggtctgtggagatcctcctcttcatcctataacggaaaaccacctttaggttcgttcgttcttcagtttttgc |
35800380 |
T |
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| Q |
111 |
atggattgatctttgatgtgaaactg |
136 |
Q |
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| T |
35800379 |
atggattgatctttgatgtgaaactg |
35800354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 380 - 511
Target Start/End: Complemental strand, 35786858 - 35786726
Alignment:
| Q |
380 |
gttgatagataactatgtttctatttgtgttggatattctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatgcgggcta-t |
478 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||| | ||||||||||| |||||||||| | |||| | ||| | |
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| T |
35786858 |
gttgatagataactatgtttctgtttgtgttggatcttctgccaattatgttctgtaatcacttttgtctgtgctgtgctttgattacatgtcgtctatt |
35786759 |
T |
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| Q |
479 |
ggtttgctatttcgaattgaatatctagaaatc |
511 |
Q |
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| T |
35786758 |
gatatgctatttctaattgaatatctagtaatc |
35786726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 381 - 511
Target Start/End: Complemental strand, 35761929 - 35761798
Alignment:
| Q |
381 |
ttgatagataactatgtttctatttgtgttggatattctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatgcgggctatgg |
480 |
Q |
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||||||||||||||||||||| |||||||||||| || ||| |||||||||||||| | | |||||| |||| |||||||||| ||||| | |||| | |
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| T |
35761929 |
ttgatagataactatgtttctgtttgtgttggatcttatgcagattatgttctgtattcacttttgtttgtgctgtgctttgatttcattttgtctatag |
35761830 |
T |
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| Q |
481 |
tt-tgctatttcgaattgaatatctagaaatc |
511 |
Q |
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| T |
35761829 |
ttatgttatttctaattgaatatctagtaatc |
35761798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 35762662 - 35762586
Alignment:
| Q |
15 |
ggatcagtaaccatcatcaagtgggtcagtggagatcctcctcttcatcctataacggaaaaccacctttaggttcgttc |
94 |
Q |
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|||||||||| ||||||||||||||||| |||| ||||||| || |||||||| ||||| |||||||| |||| |||| |
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| T |
35762662 |
ggatcagtaatcatcatcaagtgggtcactggaaatcctcc---tcgtcctataaaggaaagccacctttgggttagttc |
35762586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 35767949 - 35767904
Alignment:
| Q |
12 |
aaaggatcagtaaccatcatcaagtgggtcagtggagatcctcctc |
57 |
Q |
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| T |
35767949 |
aaaggatcagcaatcatcatcaagtgggtcagaggagatcctcctc |
35767904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 35790220 - 35790180
Alignment:
| Q |
96 |
ttcttcagtttttgcatggattgatctttgatgtgaaactg |
136 |
Q |
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| T |
35790220 |
ttcttcagtttttgcatggattactctttgatgtcaaactg |
35790180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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