View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20748_low_5 (Length: 451)
Name: NF20748_low_5
Description: NF20748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20748_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 22653936 - 22654369
Alignment:
| Q |
1 |
tgggaaaatctcgggtttgagtagtgcatgtagatgaagaacaagaaataggtttgtaagaagaagaaaaattcgggttaaataccgggtcgagcatgac |
100 |
Q |
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| T |
22653936 |
tgggaaaatctcgggtttgggtagtgcatgtagatgaagaacaagaaataggtttgtatgaagaagaaaaattcgggttaaaaaccgggtcaggcatgac |
22654035 |
T |
|
| Q |
101 |
ccggtttgttgagttgttgcaatgaagccatgaaagttcacttcctgtgtcaatgactaatgacacgttttgtnnnnnnntgccaatagtaattgaaaca |
200 |
Q |
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| T |
22654036 |
ccggtttgttgagttgttgcaatgaagccatgaaagttcacttcctgtgtcaatgactaatgacacgttttgtgggggggtgccaatagtaattgaaaca |
22654135 |
T |
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| Q |
201 |
gtgagactaacattgtgatgaaacctaagcttgtttggtggtcttggaagatacccagatgagataacttgtgatttgagtggtaaagttaagatctttg |
300 |
Q |
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| T |
22654136 |
gtgagactaacattgtgatgaaacctaagcttgtttggtggtcttggaagatacccagatgagataacttgtgatttgagtggtaaagttaagatctttg |
22654235 |
T |
|
| Q |
301 |
tttgtgttgtgagtggtaaagtttgtagaatgagaaaaatgataattttgaaaaatgagtttgtgagtatggtgcatctcattatggcttttcacctttt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22654236 |
tttgtgttgtgagtggtaaagtttgtagaatgagaaaaatgataattttgagaaatgagtttgtgagaatggtgcatctcattatggcttttcacctttt |
22654335 |
T |
|
| Q |
401 |
agaatgatgcaaattggtgcaaatgtgtgataat |
434 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
22654336 |
agaatgatgcaaattggtgcaaatgtgtgataat |
22654369 |
T |
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