View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20748_low_6 (Length: 445)
Name: NF20748_low_6
Description: NF20748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20748_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 45729429 - 45729173
Alignment:
| Q |
1 |
tttcatggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgtatgagattgcg |
100 |
Q |
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| T |
45729429 |
tttcatggagattatatttagtttttctggggcgatggagatggttgtcaatggtggaggatggtggtggagacggtggcgtttgatgtatgagattgcg |
45729330 |
T |
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| Q |
101 |
aggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgaggggag |
200 |
Q |
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| T |
45729329 |
aggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgaggggag |
45729230 |
T |
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| Q |
201 |
cactgcaggtacctagggataatatgagacaatttactacgagaaggaatctcttca |
257 |
Q |
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| T |
45729229 |
cactgcaggtacctagggataatatgagacaatttactacgagaaggaatctcttca |
45729173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 45725240 - 45724991
Alignment:
| Q |
1 |
tttcatggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgtatgagattgcg |
100 |
Q |
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| T |
45725240 |
tttcatggagattatattttgtttttctgaggcgatggagatggtgttggatggtaaaggtttgtggcggtgacggaaacgttggatgtatgagattgtg |
45725141 |
T |
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| Q |
101 |
aggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgaggggag |
200 |
Q |
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| T |
45725140 |
aggggaatgagcatcaaggggaaaccggcagtttccaggcaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattattaggggac |
45725041 |
T |
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| Q |
201 |
cactgcaggtacctagggataatatgagacaatttactacgagaaggaat |
250 |
Q |
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| T |
45725040 |
caccggagttacctagggctaatatcagacaatttactatcagaaggaat |
45724991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 323 - 425
Target Start/End: Complemental strand, 45729107 - 45729000
Alignment:
| Q |
323 |
gtcactactttgatttgtgtaattgctta---ataatgaaacttaatgctcagatatgtaggggctatatatat--nnnnnnntatttatattcgccata |
417 |
Q |
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| T |
45729107 |
gtcactactttgatttgtgtaattgcttattaataatgaaacttaatgctcagatatgtaggggctatatatataaaaaaaaatatttatattcgccata |
45729008 |
T |
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| Q |
418 |
ttcgtttt |
425 |
Q |
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|||||||| |
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| T |
45729007 |
ttcgtttt |
45729000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 45724924 - 45724870
Alignment:
| Q |
323 |
gtcactactttgatttgtgtaattgcttaataatgaaacttaatgctcagatatg |
377 |
Q |
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| T |
45724924 |
gtcactactttggtttgtgtgattgcttaataatgaaacttaatgctcacatatg |
45724870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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