View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20749_high_3 (Length: 353)
Name: NF20749_high_3
Description: NF20749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20749_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 38564592 - 38564265
Alignment:
| Q |
19 |
aagatgagaacacagaggaggtgatagtggtttacgtgcatgtctcattacccttttcttatgccaggatatatcgagaaattaaaattgagtaaatgaa |
118 |
Q |
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| T |
38564592 |
aagatgagaacacagaggaggggatagtggtttacgtgcaagtctcattacccttttcttatgccaggatatatcgagaaattaaaattgagtaaatgaa |
38564493 |
T |
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| Q |
119 |
aatgcaaagattaatacttcatttgtttataaacatgtgcgaacgttcataatctcaatatatatctgactgatcaggaatttgaatgagacaaatgcag |
218 |
Q |
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| T |
38564492 |
aatgcaaagattaatacttcatttgtttataaacatgtgcgaacgttcataatctcaatatatatctgactgatcaggaatttgaatgagacaaatgcag |
38564393 |
T |
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| Q |
219 |
aggatgttgcttaacgcatttgccatataccactcgttcattagggacccttgtgaccggtgtgattgggtgcacgtgatgctaatgcatacataaacca |
318 |
Q |
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| T |
38564392 |
aggatgttgcttaacgcatttgccatataccactcgttcattagggacccttgtgaccggtgtgattgggtgcacgtgatgctaatgcatacataaacca |
38564293 |
T |
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| Q |
319 |
aattcacctttgagttgagtataatcta |
346 |
Q |
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| T |
38564292 |
aattcacctttgagttgagtatgatcta |
38564265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 34692131 - 34692224
Alignment:
| Q |
209 |
acaaatgcagaggatgttgcttaacgcatttgccatataccactcgt--tcattagggacccttgtgaccggtgtgattgggtgcacgtgatgc |
300 |
Q |
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| T |
34692131 |
acaaatgcagaggatgttgcttaaagcatttgccaaatgccacttgttctcgttagggaccctcgtgactggtgtgagcatgtgcacgtgatgc |
34692224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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