View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20749_high_4 (Length: 337)

Name: NF20749_high_4
Description: NF20749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20749_high_4
NF20749_high_4
[»] chr8 (9 HSPs)
chr8 (17-327)||(3159777-3160087)
chr8 (17-327)||(2889637-2889950)
chr8 (31-327)||(2875298-2875595)
chr8 (92-327)||(3145185-3145420)
chr8 (140-327)||(2796137-2796327)
chr8 (141-219)||(18393581-18393659)
chr8 (34-131)||(2796835-2796932)
chr8 (141-256)||(27401840-27401955)
chr8 (141-216)||(1226113-1226187)
[»] chr2 (5 HSPs)
chr2 (141-264)||(17651268-17651391)
chr2 (141-216)||(44649997-44650072)
chr2 (141-255)||(4748110-4748224)
chr2 (264-326)||(41848957-41849019)
chr2 (264-324)||(38783772-38783832)
[»] chr1 (6 HSPs)
chr1 (141-330)||(16426366-16426564)
chr1 (141-221)||(3387707-3387787)
chr1 (160-264)||(50127210-50127313)
chr1 (141-256)||(3954967-3955082)
chr1 (141-221)||(48632613-48632693)
chr1 (37-65)||(48632494-48632522)
[»] scaffold0012 (1 HSPs)
scaffold0012 (76-322)||(209133-209393)
[»] scaffold1723 (1 HSPs)
scaffold1723 (142-323)||(369-557)
[»] chr6 (3 HSPs)
chr6 (141-219)||(2602143-2602221)
chr6 (141-219)||(33234886-33234962)
chr6 (264-323)||(2602031-2602090)
[»] chr7 (9 HSPs)
chr7 (141-204)||(9729906-9729969)
chr7 (160-264)||(27993911-27994015)
chr7 (76-264)||(11820487-11820681)
chr7 (141-219)||(11809308-11809386)
chr7 (166-209)||(25445505-25445549)
chr7 (160-221)||(32716562-32716623)
chr7 (141-205)||(37338793-37338857)
chr7 (141-219)||(48598363-48598441)
chr7 (141-215)||(6439797-6439871)
[»] chr4 (2 HSPs)
chr4 (272-327)||(32593730-32593785)
chr4 (146-203)||(32593896-32593953)
[»] chr5 (1 HSPs)
chr5 (266-326)||(41815776-41815836)
[»] scaffold0325 (1 HSPs)
scaffold0325 (141-204)||(12947-13010)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 3160087 - 3159777
Alignment:
Q  17 aaaacttatactccatgaggcatgtcagacaactcaaacaaatgtctgannnnnnnctatgcttacacacatagtatattcaagagttaaagacgtgcgg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  3160087 aaaacttatactccatgaggcatgtcagacaactcaaacaaatgtctgatttttttctatgcttacacacatagtatattcaagagttaaagacgtgcgg 3159988  T
Q  117 aaaatcttgatcaacgaagggctataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgtt 216  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3159987 aaaatgttgatcaacgaagggctataaagttgattacaacgtgtttaaatttttcgatattagatggataaataaaggccaaatactattgtaacttgtt 3159888  T
Q  217 atagaccnnnnnnnaatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtc 316  Q
    |||||||       ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3159887 atagacctttttttaatgaaataaattgctcaagttagatacatatttgattctcaatttagatctttcataaataaattagtatacaggtagcagtgtc 3159788  T
Q  317 ggtgtcctatg 327  Q
    |||||||||||    
T  3159787 ggtgtcctatg 3159777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 2889637 - 2889950
Alignment:
Q  17 aaaacttatactccatgaggcatgtcagacaactcaaacaaatgtctgannnnnnn---ctatgcttacacacatagtatattcaagagttaaagacgtg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||| ||||||||||||||||||||||||||||||||    
T  2889637 aaaacttatactccatgaggcatgtcagacaactcaaacaaatgtctgattttttttttctatgcttccacacatagtatattcaagagttaaagacgtg 2889736  T
Q  114 cggaaaatcttgatcaacgaagggctataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaactt 213  Q
    |||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2889737 cggaaaatgttgatcaacgaagggctataaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatctt 2889836  T
Q  214 gttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagt 313  Q
    ||||||||||       ||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  2889837 gttatagacctttttttaatgaaataaattgctcaagtaagatacatacgtgattctcaatttagatctttcataaataaattagtatacaagtagcagt 2889936  T
Q  314 gtcggtgtcctatg 327  Q
    ||||||||||||||    
T  2889937 gtcggtgtcctatg 2889950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 31 - 327
Target Start/End: Original strand, 2875298 - 2875595
Alignment:
Q  31 atgaggcatgtcagacaactcaaacaaatgtctgannnnnnn-ctatgcttacacacatagtatattcaagagttaaagacgtgcggaaaatcttgatca 129  Q
    ||||||||||| |||||||||||||||||||||||        |||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||    
T  2875298 atgaggcatgttagacaactcaaacaaatgtctgattttttttctatgcttccacacatagtatattcaagagttgaagacgtgaggaaaatgttgatca 2875397  T
Q  130 acgaagggctataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnn 229  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||          
T  2875398 acgaagggctataaagttgattacaacgtgtttaaatttttcaatagtagatggataaataaaggccaaatactattgtatcttgttataaacctttttt 2875497  T
Q  230 naatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 327  Q
     |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  2875498 taatgaactaaattgctcaagttagatacatatgtgattctcaattaagatctttcataaatagattagtatacaggtggcagtgtcggtgtcctatg 2875595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 92 - 327
Target Start/End: Complemental strand, 3145420 - 3145185
Alignment:
Q  92 atattcaagagttaaagacgtgcggaaaatcttgatcaacgaagggctataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataa 191  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  3145420 atattcaagagttaaagacgtgcggaaaatgttgatcaacgaagggctataaagttgaatacaacgtttttaaatttttcgatagtagatggataaataa 3145321  T
Q  192 aggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagat 291  Q
    |||||||||||||||||| |||||||||||||       ||||||||||||| ||||||| ||||||||  |||||||||||||||||||||||||| ||    
T  3145320 aggccaaatactattgtatcttgttatagacctttttttaatgaaataaattgctcaagtaagatacatgcgtgattctcaatttagatctttcataaat 3145221  T
Q  292 aaattagtatacaggtagcagtgtcggtgtcctatg 327  Q
    ||||||||||||| |||| |||||||||||||||||    
T  3145220 aaattagtatacaagtagtagtgtcggtgtcctatg 3145185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 140 - 327
Target Start/End: Complemental strand, 2796327 - 2796137
Alignment:
Q  140 ataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagacc---nnnnnnnaatgaa 236  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||    
T  2796327 ataaagttgattacaacgtatttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccttttttttttaatgaa 2796228  T
Q  237 ataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 327  Q
    ||||||| |||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| | |||||||||| |||||||||||    
T  2796227 ataaattgctcaagttagatgcatatgtgattctcaattaagatctttcataaataaattagtatagaagtagcagtgtgggtgtcctatg 2796137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 18393581 - 18393659
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 219  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||    
T  18393581 taaagttgattacaacgtttttaaattttttgatagtagatggataaataaaggtcaaatactattttatcttgttata 18393659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 2796932 - 2796835
Alignment:
Q  34 aggcatgtcagacaactcaaacaaatgtctgannnnnnnctatgcttacacacatagtatattcaagagttaaagacgtgcggaaaatcttgatcaac 131  Q
    |||||||||||||||||||||||||||| |||       |||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  2796932 aggcatgtcagacaactcaaacaaatgtatgatttttttctatgcttccacacatagtatattcaagagttgaagacgtgaggaaaatgttgatcaac 2796835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 27401955 - 27401840
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 240  Q
    |||||||||||||||||| |||   | |||| |||||||||||||||||||||||||||| |||||||| ||||||||| | |       ||||||||||    
T  27401955 taaagttgattacaacgtttttttttctttcaatagtagatggataaataaaggccaaattctattgtatcttgttatataactttttttaatgaaataa 27401856  T
Q  241 attactcaagttagat 256  Q
    ||| ||||||||||||    
T  27401855 attgctcaagttagat 27401840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 1226187 - 1226113
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgtt 216  Q
    |||||||||||||||| | ||||||||||| ||||||||||| ||||||||||  |||||||| | ||| ||||||    
T  1226187 taaagttgattacaacatttttaaattttt-gatagtagatgaataaataaagatcaaatactctggtatcttgtt 1226113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 141 - 264
Target Start/End: Complemental strand, 17651391 - 17651268
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 240  Q
    |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |       ||||||||||    
T  17651391 taaagttgattacaacgtatttaagtttttcaatagtagatggataaataaaggccaaatattattgtaacttgttatagaacttcttgtaatgaaataa 17651292  T
Q  241 attactcaagttagatacatatgt 264  Q
    ||| |||||||||||| |||||||    
T  17651291 attgctcaagttagatgcatatgt 17651268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 44649997 - 44650072
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgtt 216  Q
    |||||||||||||||| | ||||| ||||| ||||||||||| ||||||||||| ||||| |||| ||| ||||||    
T  44649997 taaagttgattacaacatttttaacttttttgatagtagatgaataaataaaggtcaaattctatggtatcttgtt 44650072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 255
Target Start/End: Original strand, 4748110 - 4748224
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 240  Q
    |||||||||||||| | | ||||  || ||| |||| ||||| ||||||||||| |||||||||| |||||||||| |||| |       ||||||||||    
T  4748110 taaagttgattacagcatttttagtttgttcaatagaagatgaataaataaaggtcaaatactatcgtaacttgttttagaactttttccaatgaaataa 4748209  T
Q  241 attactcaagttaga 255  Q
    ||| |||||||||||    
T  4748210 attgctcaagttaga 4748224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 41849019 - 41848957
Alignment:
Q  264 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctat 326  Q
    ||||||||||||||||| ||| ||| |||||||| |||| || |||| |||||||||||||||    
T  41849019 tgattctcaatttagatattttataaataaattaatatatagatagcggtgtcggtgtcctat 41848957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 38783772 - 38783832
Alignment:
Q  264 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcct 324  Q
    |||||||||||| |||| ||| ||| |||||||| |||| || |||||| |||||||||||    
T  38783772 tgattctcaattcagatattttataaataaattaatatatagatagcagcgtcggtgtcct 38783832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 141 - 330
Target Start/End: Complemental strand, 16426564 - 16426366
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 240  Q
    ||||||||||||||  |  |||||||||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||| |       |||||| |||    
T  16426564 taaagttgattacagtgcatttaaatttttcaataatagatagataaataaaggccaaatactattgtaatttgttatagaacttgttttaatgaagtaa 16426465  T
Q  241 attactcaagttagatacatatg---------tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgctt 330  Q
    ||| |||||||||||| ||||||         ||||||| |||||| |||||| ||| |||||||| |||| ||||||| ||||| |||||||||||||    
T  16426464 attgctcaagttagatgcatatgtatgtattttgattcttaatttatatcttttataaataaattaatatataggtagcggtgtcagtgtcctatgctt 16426366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 3387787 - 3387707
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttataga 221  Q
    |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| || |||||||||||    
T  3387787 taaagttgattacaacgtttttaaatttttcgatggtagatgaataaataaaggtcaaatactattttatcttgttataga 3387707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 160 - 264
Target Start/End: Original strand, 50127210 - 50127313
Alignment:
Q  160 tttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagataca 259  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |       |||||||||||||  ||||||||||| ||    
T  50127210 tttaaatttttcgatagtagatgaa-aaataaaggccaaatactattgtatcttgttatagaactttatttaatgaaataaattgttcaagttagatgca 50127308  T
Q  260 tatgt 264  Q
    |||||    
T  50127309 tatgt 50127313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 3955082 - 3954967
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 240  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||||||||||| ||||||| || ||| ||| || |||| |       ||||||||||    
T  3955082 taaagttgattacaacgtttttagctttttcgatagtagatggataaataaaggtcaaatacgatcgtatcttattttagaactttttttaatgaaataa 3954983  T
Q  241 attactcaagttagat 256  Q
    ||| ||||||||||||    
T  3954982 attgctcaagttagat 3954967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 48632613 - 48632693
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttataga 221  Q
    |||||||||||||||||| ||||  ||||| ||||||||| | ||||||||||| |||||||||| ||| |||||| ||||    
T  48632613 taaagttgattacaacgtttttagcttttttgatagtagaagaataaataaaggtcaaatactatggtatcttgttttaga 48632693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 48632494 - 48632522
Alignment:
Q  37 catgtcagacaactcaaacaaatgtctga 65  Q
    |||||||||||||||||||||||||||||    
T  48632494 catgtcagacaactcaaacaaatgtctga 48632522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 76 - 322
Target Start/End: Complemental strand, 209393 - 209133
Alignment:
Q  76 tgcttacacacatagtatattcaagagttaaagacgtgcggaaaatcttgatcaacgaagggctat-------aaagttgattacaacgtgtttaaattt 168  Q
    ||||| ||||||| ||| ||||||||||||||||  || |  |||| ||||||||||| ||| |||       |||||| |||||||||| |||||||||    
T  209393 tgctttcacacatggtagattcaagagttaaagatttgtgagaaatgttgatcaacgaggggttatcgacattaaagtttattacaacgtttttaaattt 209294  T
Q  169 ttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatg----- 263  Q
    |||||| |||||||||||||||||||||||||| | |||||  |||||||||| |       ||||||||||||| ||  |||||||| ||||||         
T  209293 ttcgattgtagatggataaataaaggccaaatattgttgtattttgttatagaactttttttaatgaaataaattgct--agttagatgcatatgtatgt 209196  T
Q  264 ----tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtc 322  Q
        ||||||||||||||||| ||| ||| |||||||| |||| |  |||||||||| |||||    
T  209195 attttgattctcaatttagatattttataaataaattaatatataaatagcagtgtctgtgtc 209133  T

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Target: scaffold1723 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 142 - 323
Target Start/End: Original strand, 369 - 557
Alignment:
Q  142 aaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaa 241  Q
    |||||||||| |||||| ||| |||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||         ||||||||||     
T  369 aaagttgattccaacgtatttcaatttt-cgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaattttttttaatgaaataat 467  T
Q  242 ttactcaagttagatacata--------tgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcc 323  Q
    || |||||||||||| ||||        | ||||||| |||| |||||||| ||| |||||||| |||| || |||| ||||||||||||    
T  468 ttgctcaagttagatgcatattatgtattttgattcttaattaagatcttttataaataaattaatatatagatagcggtgtcggtgtcc 557  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 2602221 - 2602143
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 219  Q
    ||||||||||||||||   ||||||||||||||||||| |||||||||||||||  ||||||||||||| |||||||||    
T  2602221 taaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggtaaatactattgtatcttgttata 2602143  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 33234886 - 33234962
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 219  Q
    |||||||||||||||| | || ||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||||    
T  33234886 taaagttgattacaacattttgaaatttt-cgatagtagatggataaat-aaggtcaaatactattgtatcttgttata 33234962  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 2602090 - 2602031
Alignment:
Q  264 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcc 323  Q
    ||||||| ||||||||||||| ||| |||||||| |||| ||||||  ||||||||||||    
T  2602090 tgattcttaatttagatcttttataaataaattaatatataggtagaggtgtcggtgtcc 2602031  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 9729906 - 9729969
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatacta 204  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||||||    
T  9729906 taaagttgattacaacgcatttaaatttttcgatagtaggtggataaataaagtccaaatacta 9729969  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 264
Target Start/End: Complemental strand, 27994015 - 27993911
Alignment:
Q  160 tttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagataca 259  Q
    ||||||||||||||| ||||||||||||||||||  ||| | |||||||| ||||||||||| |       ||||||||||||| ||||||||| || ||    
T  27994015 tttaaatttttcgatggtagatggataaataaagatcaattgctattgtatcttgttatagaactttatttaatgaaataaattgctcaagttaaatgca 27993916  T
Q  260 tatgt 264  Q
    |||||    
T  27993915 tatgt 27993911  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 264
Target Start/End: Original strand, 11820487 - 11820681
Alignment:
Q  76 tgcttacacacatagtatattcaagagttaaagacgtgcggaaaatcttgatcaacgaagggcta-------taaagttgattacaacgtgtttaaattt 168  Q
    ||||| |||||| |||| |||||||||||||||| ||| |  |||| ||||||||||||||| ||       ||||| |||||||||| | |||||| ||    
T  11820487 tgcttccacacacagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaagggttatagacattaaagatgattacaacatttttaaaatt 11820586  T
Q  169 ttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgt 264  Q
    ||  |||||||||  ||||||||||  ||||| ||||||||  |||| ||||| |       ||||||||||||| |||||||||||| |||||||    
T  11820587 tttaatagtagataaataaataaagctcaaatgctattgtatgttgtcatagaac-tttttgaatgaaataaattgctcaagttagatgcatatgt 11820681  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 11809308 - 11809386
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 219  Q
    |||| ||||||||||| | ||||||||||| ||  ||||||| |  ||||||||||||||||||||||| |||||||||    
T  11809308 taaatttgattacaacctttttaaattttttgacggtagatgaagtaataaaggccaaatactattgtatcttgttata 11809386  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 25445549 - 25445505
Alignment:
Q  166 tttttcgatagtagatggataaat-aaaggccaaatactattgta 209  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  25445549 tttttcgatagtagatggataaataaaaggccaaatactattgta 25445505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 32716562 - 32716623
Alignment:
Q  160 tttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttataga 221  Q
    ||||| |||||||||||| |||| ||||||||||  |||||||||||||| |||||| ||||    
T  32716562 tttaactttttcgatagtggatgaataaataaagatcaaatactattgtatcttgttttaga 32716623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 37338793 - 37338857
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactat 205  Q
    |||||||||| | ||| | ||||| ||||| ||||||||||| ||||||||||| ||||||||||    
T  37338793 taaagttgataataacatttttaacttttttgatagtagatgaataaataaaggtcaaatactat 37338857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 48598441 - 48598363
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatag-tagatggataaataaaggccaaatactattgtaacttgttata 219  Q
    |||||||| ||||||||| ||| ||||||| ||||  ||| |||||||||||||| |||||||||||||| | |||||||    
T  48598441 taaagttggttacaacgttttttaattttttgatatatag-tggataaataaaggtcaaatactattgtatcgtgttata 48598363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 6439871 - 6439797
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgt 215  Q
    |||||||||||||||| | ||||  |||||||||||||| || ||||||| | | |||||||||| ||| |||||    
T  6439871 taaagttgattacaacatttttatctttttcgatagtagttgaataaatagatgtcaaatactatcgtatcttgt 6439797  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 32593785 - 32593730
Alignment:
Q  272 aatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 327  Q
    |||||||||| || ||| ||||||||||||||||||||| ||||| ||||||||||    
T  32593785 aatttagatcatttataaataaattagtatacaggtagcggtgtcagtgtcctatg 32593730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 32593953 - 32593896
Alignment:
Q  146 ttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatact 203  Q
    |||||||||||   ||||||||||| || ||||||||||||||||||||| |||||||    
T  32593953 ttgattacaacacatttaaattttttgagagtagatggataaataaaggctaaatact 32593896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 41815776 - 41815836
Alignment:
Q  266 attctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctat 326  Q
    ||||||||||| ||||||| ||| |||||||| |||| | ||||| |||||||||||||||    
T  41815776 attctcaatttggatcttttataaataaattaatatatatgtagcggtgtcggtgtcctat 41815836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 13010 - 12947
Alignment:
Q  141 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatacta 204  Q
    ||||||||||||||| || ||||  ||||| ||||||||||| ||||||||| | |||||||||    
T  13010 taaagttgattacaatgtttttagcttttttgatagtagatgaataaataaatgtcaaatacta 12947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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