View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20749_low_1 (Length: 507)
Name: NF20749_low_1
Description: NF20749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20749_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Original strand, 30877547 - 30878026
Alignment:
| Q |
18 |
actaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttcaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30877547 |
actaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttctgcctcactatgattcttcaaa |
30877646 |
T |
|
| Q |
118 |
gcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagagaaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877647 |
gcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggttcctctacaagctcccctctctccctatccaaaaccagagagaaac |
30877746 |
T |
|
| Q |
218 |
ttgaaccatacccacttccaattacctcattgtttacttcaaaaccatttttactaattctctcagtagcatctccaaatatatcataaccttccatttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877747 |
ttgaaccatacccacttccaattacctcattgtttacttcaaaaccatttttaccaattctctcagtagcatctccaaatatatcataaccttccatttc |
30877846 |
T |
|
| Q |
318 |
catagcaaagtgaaaagagaaatgaaaaaggagagttgtttgtggggaccaaacacaggagacaaccttggaaacaatggaataaggagaggtgtttgtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877847 |
catagcaaagtgaaaagagaaatgaaaaaggagagttgtttgtggggaccaaacacaggagacaaccttggaaacaatggaataaggagaggtgtttgtt |
30877946 |
T |
|
| Q |
418 |
ctgtgtcagagttgttttggagtgtgatagtgatgaaaatgacagtgtcagtgaacaagtgacagtagatgatgatgatg |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877947 |
ctgtgtcagagttgttttggagtgtgatagtgatgaaaatgacagtgtcagtgaacaagtgacagtagatgatgatgatg |
30878026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 39332728 - 39332933
Alignment:
| Q |
34 |
cctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttcaaagcttcaacacttctct |
133 |
Q |
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|||||||| |||| |||||| ||||||||||||| |||||| || ||||||||||| ||||| || ||||||||||||||||||||||||| |||||||| |
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| T |
39332728 |
cctggaataacactacgaagtgtatcaagatgtgaattaattcttgctcttctccttctttctgcttcactatgattcttcaaagcttcaatacttctct |
39332827 |
T |
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| Q |
134 |
ctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagagaaacttgaaccatacccact |
233 |
Q |
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| || || |||||||||| ||||| ||| |||| |||||| |||||||| ||| | || ||||| |||||||| || || ||||||||| ||| | |
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| T |
39332828 |
c---aggtgatacaccctttctttccaatttcacagctgcctccacaagctctcctttttctctatctaaaaccagtgaagaagatgaaccatatccatt |
39332924 |
T |
|
| Q |
234 |
tccaattac |
242 |
Q |
| |
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|||| |||| |
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| T |
39332925 |
tccatttac |
39332933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 30203571 - 30203705
Alignment:
| Q |
105 |
atgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaa |
204 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||||||||||| ||| | ||| |||| |||||| |||| ||| ||| | || ||||||||| |
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| T |
30203571 |
atgattcttcaaagcttcaatacttctctc---aggtgacacaccctttctttctaatttcacagttgcctccacaaactctcctttttctctatccaaa |
30203667 |
T |
|
| Q |
205 |
accagagagaaacttgaaccatacccacttccaattac |
242 |
Q |
| |
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||||| || || ||||||||| ||| ||||| |||| |
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| T |
30203668 |
accagcgaagaagatgaaccatatccatttccatttac |
30203705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 12102483 - 12102677
Alignment:
| Q |
42 |
gacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttcaaagcttcaacacttctctctgtagtg |
141 |
Q |
| |
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||||| |||||| |||||||||||| |||||| || |||||||||||| || || ||||||||||||||||||||||| | ||||||| | || |
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| T |
12102483 |
gacactacgaagtgtatcaagatgtaaattaattcttgctcttctcctc---tctgcttcactatgattcttcaaagcttcgatacttctccc---aggt |
12102576 |
T |
|
| Q |
142 |
gacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagagaaacttgaaccatacccacttccaatta |
241 |
Q |
| |
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||||||||||||| ||| | ||| |||| |||||| |||||||| ||| | || |||||||||||||| || || ||||||||| ||||||||| ||| |
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| T |
12102577 |
gacacaccctttctttctaatttcacagctgcctccacaagctctcctttttctctatccaaaaccagtgaagaagatgaaccatatccacttccattta |
12102676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 17146474 - 17146603
Alignment:
| Q |
100 |
tcactatgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctat |
199 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||| | ||| |||| |||||| ||||||| ||| | || |||| |
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| T |
17146474 |
tcactatgattcttcaaagcttcaatacttctctcag--gtg---acaccctttctttctaatttcacagctgcctccgcaagctctcctttttctctat |
17146568 |
T |
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| Q |
200 |
ccaaaaccagagagaaacttgaaccatacccactt |
234 |
Q |
| |
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|||||||||| || || ||||||||| |||||| |
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| T |
17146569 |
ccaaaaccagtgaagaagatgaaccatatccactt |
17146603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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