View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20749_low_2 (Length: 426)
Name: NF20749_low_2
Description: NF20749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20749_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 410
Target Start/End: Complemental strand, 6528137 - 6527741
Alignment:
| Q |
13 |
aatataacaatgagagcaaatagaatgaagtctttcatattcgccgatataaaagcaaaggttaatgctacatatagcgaaaaatttgtcccgaggatat |
112 |
Q |
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| T |
6528137 |
aatataacaatgagagcaaatagaatgaagtctttcatattcgccgatataaaagcaaaggttaatgctacatatagcgaaaaatttgtcccgaggatat |
6528038 |
T |
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| Q |
113 |
cccgacactgacatgtgtactgagcgaattctagtacttagttccaaccacccatgtattgtgtgatatgaagatccaatggtgatgctacgttcgcaat |
212 |
Q |
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| T |
6528037 |
cccgacactgacatgtgtattgagcaaattctagtacttagttccaaccacccatgtattgtgtgatatgaagatccaatggtgatgctacgttcgcaat |
6527938 |
T |
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| Q |
213 |
gcattgtgaaagagtgttcgctatatatatagcaacactcaaaagcaaaatcctcttgttgcaccatattgattttattaggcaattttcttgtgacact |
312 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6527937 |
gcattgtgaaagtgtgttcgctata--tatagcaacactcaaaagcaaaatcctcttgttgcaccatattgattttattaggcaattttcttgtgacact |
6527840 |
T |
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| Q |
313 |
aatgtcat-aaaggacaattgcaaaatggtcgaatgtttgacccgtcgtggctgtatataaaacgattagagtctcaatactaccaacaatctcaaaca |
410 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6527839 |
aatgtcataaaaggacaattgcaaaatggtcgaatgtttgacccgtcgtggctgtatataaaacgattagagtctcaatactaccaacaatctcaaaca |
6527741 |
T |
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