View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20749_low_3 (Length: 381)
Name: NF20749_low_3
Description: NF20749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20749_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 29262720 - 29262621
Alignment:
| Q |
68 |
ctttaaaatgtaacttgatcaactattttcttcccaagttccatgaactcgagagaggaaaggaacaaaactacttgtttaatatgagttacgtttttat |
167 |
Q |
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| T |
29262720 |
ctttaaaatgtaacttgatcaactattttcttcccaagttccatgaactcgagagaggaaaggaaataaacta---gtttcatatgagttacgtttttat |
29262624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 29262560 - 29262510
Alignment:
| Q |
204 |
aaaatacttgaccttttttaaaaaagaaagggaaagttctgatgaccttta |
254 |
Q |
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| T |
29262560 |
aaaatacttgacctttattagaaaagaaagggaaagttttgatgaccttta |
29262510 |
T |
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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 27613279 - 27613189
Alignment:
| Q |
82 |
ttgatcaactattttcttcccaagttccatgaactcgagagaggaaaggaacaaaactacttgtttaatatgagttacgtttttatgctcgagag |
176 |
Q |
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| T |
27613279 |
ttgatcaactattttcttcccaagttccatgagctc--gacaggaaaggaacaaatttacttattta--atgagttacgtttttatgctcgagag |
27613189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 27613127 - 27613062
Alignment:
| Q |
211 |
ttgaccttttttaaaaaagaaagggaaagttctgatgacctttatattgtagcatggttaatttaa |
276 |
Q |
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| T |
27613127 |
ttgaccttttttgaaaaagaaaagtaaagttctgattacctttatattgtagcatggttaatttaa |
27613062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 26847377 - 26847413
Alignment:
| Q |
316 |
atgatttggggtaatagatatgccaaaattaagacct |
352 |
Q |
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| T |
26847377 |
atgatttggggcaatagatatgccaaaataaagacct |
26847413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 3062072 - 3062010
Alignment:
| Q |
102 |
caagttccatgaactcgagagaggaaaggaacaaaactacttgtttaatatgagttacgtttt |
164 |
Q |
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| T |
3062072 |
caagttccttgaacccgaaagaggaaaggaacaaaacgacttgtttaatatgaattacatttt |
3062010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 368
Target Start/End: Original strand, 5084301 - 5084348
Alignment:
| Q |
321 |
ttggggtaatagatatgccaaaattaagacctaaacaaatgtgtatat |
368 |
Q |
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| T |
5084301 |
ttggggtaatagatatgccaaaataaagatctgaacaaatttgtatat |
5084348 |
T |
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