View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20749_low_6 (Length: 288)
Name: NF20749_low_6
Description: NF20749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20749_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 2268794 - 2268522
Alignment:
| Q |
1 |
tacaaagaatttttctcatattacctatttagaccataatacccagcacactataggccctaataaaaccacataacaacttatgtatcaaagacaagta |
100 |
Q |
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| T |
2268794 |
tacaaagaattcttctcagattacctatttagaccataatacccagcacactataggccctaataaaaccacataacaacttatgtatcaaagacaagta |
2268695 |
T |
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| Q |
101 |
ataatcttgtctcattttagaaaagaatctataagagctgatatgggcaacaacaaaaaccaattaattatatacatgtgagagaaataggtagccacct |
200 |
Q |
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| T |
2268694 |
ataatcttgtctcattttagaaaagaatctataagagctgatatgggcaacaacaaaaaccaattaattatatacatgtgagagaaataggtagccacct |
2268595 |
T |
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| Q |
201 |
aacaaaacaactacataccgattaactaatatacaaagttttttcatgtctgaaaaaatcaagtggtagacat |
273 |
Q |
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| T |
2268594 |
aacaaaataactacataccgattaactaatatacaaagttttttcatgtctgaaaaaatcaagtgatagacat |
2268522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 2268851 - 2268809
Alignment:
| Q |
17 |
catattacctatttagaccataatacccagcacactataggcc |
59 |
Q |
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| T |
2268851 |
cataatacccatttagaccataatacccagcacactataggcc |
2268809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 2268899 - 2268865
Alignment:
| Q |
37 |
taatacccagcacactataggccctaataaaacca |
71 |
Q |
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| T |
2268899 |
taatacccagcacactataggccctgataaaacca |
2268865 |
T |
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