View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20749_low_8 (Length: 227)
Name: NF20749_low_8
Description: NF20749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20749_low_8 |
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| [»] scaffold0496 (1 HSPs) |
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| [»] scaffold1330 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 7457505 - 7457315
Alignment:
| Q |
19 |
caattttcatcgtagctgatgtagctcccctgatctaattagtgatcggaaattcttgttcaatgcagaaattaagccataatcagaccttgacaattga |
118 |
Q |
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| T |
7457505 |
caattttcgtcgtagctgatgtagctcccctgatctaattagtgatcgaaaattcttgttcaatgcagaaattaagccataatcagaccttgacaattga |
7457406 |
T |
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| Q |
119 |
agaagacaatggattgatatatcccgaccaagatgttgaaaaagcaaactcgagtcatgtgtcatatcttcttgccttttacaatccctat |
209 |
Q |
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| T |
7457405 |
agaagacaatggattgatatatcccgaccaagatgttgaaaaagcaaactcgagtcatgtgtcatatcttcttgccttttacaatccctat |
7457315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 7411398 - 7411292
Alignment:
| Q |
47 |
cctgatctaattagtgatcggaaattcttgttcaatgcagaaattaagccataatcagaccttgacaattgaagaagacaatggattgatatatcccgac |
146 |
Q |
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| T |
7411398 |
cctgatctaattagcgatcgaaagctcttgttcaatgcagcaattgaaccataatcagatcttgacaattgaagaagacaatggattgatatatctcgac |
7411299 |
T |
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| Q |
147 |
caagatg |
153 |
Q |
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| T |
7411298 |
cgagatg |
7411292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 44919500 - 44919444
Alignment:
| Q |
80 |
aatgcagaaattaagccataatcagaccttgacaattgaagaagacaatggattgat |
136 |
Q |
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| T |
44919500 |
aatgcagcgattgagccataatcagaccttgacacccgaaggagacaatggattgat |
44919444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 2326 - 2220
Alignment:
| Q |
47 |
cctgatctaattagtgatcggaaattcttgttcaatgcagaaattaagccataatcagaccttgacaattgaagaagacaatggattgatatatcccgac |
146 |
Q |
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|||||||||||||| ||||| || ||||||||||||||| |||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
2326 |
cctgatctaattagcgatcgaaagctcttgttcaatgcagcaattgaaccataatcagatcttgacaattgaagaagacaatggattgatatatctcgac |
2227 |
T |
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| Q |
147 |
caagatg |
153 |
Q |
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| T |
2226 |
cgagatg |
2220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1330 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold1330
Description:
Target: scaffold1330; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 1128 - 1022
Alignment:
| Q |
47 |
cctgatctaattagtgatcggaaattcttgttcaatgcagaaattaagccataatcagaccttgacaattgaagaagacaatggattgatatatcccgac |
146 |
Q |
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| T |
1128 |
cctgatctaattagagatctaaagctcttgtttattgcagcaattgaaccataatcagatcttgacaaccgaagaagacaatggattgatatatctcgac |
1029 |
T |
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| Q |
147 |
caagatg |
153 |
Q |
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| T |
1028 |
cgagatg |
1022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 4250 - 4356
Alignment:
| Q |
47 |
cctgatctaattagtgatcggaaattcttgttcaatgcagaaattaagccataatcagaccttgacaattgaagaagacaatggattgatatatcccgac |
146 |
Q |
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|||||||||||||| |||| || ||||||| | ||||| |||| | ||||||||||| |||||||| ||||||||||||||||||||||||| |||| |
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| T |
4250 |
cctgatctaattagagatctaaagctcttgtttattgcagcaattgaaccataatcagatcttgacaaccgaagaagacaatggattgatatatctcgac |
4349 |
T |
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| Q |
147 |
caagatg |
153 |
Q |
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| T |
4350 |
cgagatg |
4356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 4363 - 4469
Alignment:
| Q |
47 |
cctgatctaattagtgatcggaaattcttgttcaatgcagaaattaagccataatcagaccttgacaattgaagaagacaatggattgatatatcccgac |
146 |
Q |
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|||||||||||||| |||| || ||||||| | ||||| |||| | ||||||||||| |||||||| ||||||||||||||||||||||||| |||| |
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| T |
4363 |
cctgatctaattagagatctaaagctcttgtttattgcagcaattgaaccataatcagatcttgacaaccgaagaagacaatggattgatatatctcgac |
4462 |
T |
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| Q |
147 |
caagatg |
153 |
Q |
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| ||||| |
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| T |
4463 |
cgagatg |
4469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 10445 - 10551
Alignment:
| Q |
47 |
cctgatctaattagtgatcggaaattcttgttcaatgcagaaattaagccataatcagaccttgacaattgaagaagacaatggattgatatatcccgac |
146 |
Q |
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|||||||||||||| |||| || ||||||| | ||||| |||| | ||||||||||| |||||||| ||||||||||||||||||||||||| |||| |
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| T |
10445 |
cctgatctaattagagatctaaagctcttgtttattgcagcaattgaaccataatcagatcttgacaaccgaagaagacaatggattgatatatctcgac |
10544 |
T |
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| Q |
147 |
caagatg |
153 |
Q |
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| ||||| |
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| T |
10545 |
cgagatg |
10551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 11718 - 11824
Alignment:
| Q |
47 |
cctgatctaattagtgatcggaaattcttgttcaatgcagaaattaagccataatcagaccttgacaattgaagaagacaatggattgatatatcccgac |
146 |
Q |
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|
|||||||||||||| |||| || ||||||| | ||||| |||| | ||||||||||| |||||||| ||||||||||||||||||||||||| |||| |
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| T |
11718 |
cctgatctaattagagatctaaagctcttgtttattgcagcaattgaaccataatcagatcttgacaaccgaagaagacaatggattgatatatctcgac |
11817 |
T |
|
| Q |
147 |
caagatg |
153 |
Q |
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| ||||| |
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| T |
11818 |
cgagatg |
11824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 34729 - 34623
Alignment:
| Q |
47 |
cctgatctaattagtgatcggaaattcttgttcaatgcagaaattaagccataatcagaccttgacaattgaagaagacaatggattgatatatcccgac |
146 |
Q |
| |
|
|||||||||||||| |||| || ||||||| | ||||| |||| | ||||||||||| |||||||| ||||||||||||||||||||||||| |||| |
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| T |
34729 |
cctgatctaattagagatctaaagctcttgtttattgcagcaattgaaccataatcagatcttgacaaccgaagaagacaatggattgatatatctcgac |
34630 |
T |
|
| Q |
147 |
caagatg |
153 |
Q |
| |
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| ||||| |
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| T |
34629 |
cgagatg |
34623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 48329 - 48223
Alignment:
| Q |
47 |
cctgatctaattagtgatcggaaattcttgttcaatgcagaaattaagccataatcagaccttgacaattgaagaagacaatggattgatatatcccgac |
146 |
Q |
| |
|
|||||||||||||| |||| || ||||||| | ||||| |||| | ||||||||||| |||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
48329 |
cctgatctaattagagatctaaagctcttgtttattgcagcaattgaaccataatcagatcttgacaaccgaagaagacaatggattgatatatctcgac |
48230 |
T |
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| Q |
147 |
caagatg |
153 |
Q |
| |
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| ||||| |
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| T |
48229 |
cgagatg |
48223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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