View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20749_low_9 (Length: 216)
Name: NF20749_low_9
Description: NF20749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20749_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 1738290 - 1738472
Alignment:
| Q |
18 |
tgaaagtgtgcatctctcgacacaaattgtttaaaagtgtatttgagactccaatggcaggggaaagaagaaccccttacatctagagccttatgtaacc |
117 |
Q |
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| T |
1738290 |
tgaaagtgtgcatctctcgacacaaattgtttaaaagtgtatttgagactccaatggctggg-aaacaagaaccccttacatctagagctttatgtaacc |
1738388 |
T |
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| Q |
118 |
attttcgatcaaccacttgagactccatttgttattctgacatttgtaggaccaaaaagcccatccaaatgttgcacgagaata |
201 |
Q |
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| T |
1738389 |
attttcgatcaaccacttgagactccatttgttattctgacatttataggaccaaaaagcccatccaaatgttgcacgagaata |
1738472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 1716884 - 1717066
Alignment:
| Q |
20 |
aaagtgtgcatctctcgacacaaattgtttaaaagtgtatttgagactccaatggcaggggaaagaagaacccctta-catctagagccttatgtaacca |
118 |
Q |
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| T |
1716884 |
aaagtgtgcatatctcgacacaaattatttaaaagtgtacttgagactgtaatggccggagaaagaagaacccctttgcatctagagctttatgtaacca |
1716983 |
T |
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| Q |
119 |
ttttcgatcaaccacttgagactccatttgttattctgacatttgtaggaccaaaaagcccatccaaatgttgcacgagaata |
201 |
Q |
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| T |
1716984 |
ttctcgatcaaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaatgttgcatgagaata |
1717066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 1753505 - 1753618
Alignment:
| Q |
88 |
aaccccttacatctagagccttatgtaaccattttcgatcaaccacttgagactccatttgttattctgacatttgtaggaccaaaaagcccatccaaat |
187 |
Q |
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| T |
1753505 |
aaccccttacatctagagctttatgtaaccattctcgatcatccacttgagactccaatggttatattgacatttgtatgcccaataagcccatccaaat |
1753604 |
T |
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| Q |
188 |
gttgcacgagaata |
201 |
Q |
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| T |
1753605 |
gttgcacgagaata |
1753618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 1748269 - 1748362
Alignment:
| Q |
108 |
ttatgtaaccattttcgatcaaccacttgagactccatttgttattctgacatttgtaggaccaaaaagcccatccaaatgttgcacgagaata |
201 |
Q |
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| T |
1748269 |
ttatgtaaccattctcgatcatccacttaaggctccaacgattaaactgacatttgtaggaccaataagcccatccaaatgttgcccgagaata |
1748362 |
T |
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