View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2074_high_2 (Length: 268)
Name: NF2074_high_2
Description: NF2074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2074_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 18194633 - 18194391
Alignment:
| Q |
18 |
gtagggtcccatactttaccactcaaaaagataaattcttcagagaataacaaatagtagatgatgcatactccattaccatattgcagttccaactgaa |
117 |
Q |
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| T |
18194633 |
gtagggtcccatactttaccactcaaaaagataaattcttcagagcataacaaatagtagatgatgcatactccattaccatattgcagttccaactgaa |
18194534 |
T |
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| Q |
118 |
ataaatgtcataagcttttggaaactacaatattactactacagagtagatatagaactgatgaagcaatatcaatagcattctcctgatatttattcta |
217 |
Q |
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| T |
18194533 |
ataaatgtcataagcttttggaaactacaatattactactacagagtagatatagaactgatgaagcaatagcaatagcattctcctgatatttattcta |
18194434 |
T |
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| Q |
218 |
aaacaaatcattggatttcagtcaaaaaatctcctttcctttg |
260 |
Q |
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| T |
18194433 |
aaacaaatcattggatttcagtcaaaaaatctcctttcctttg |
18194391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 18189319 - 18189166
Alignment:
| Q |
109 |
ccaactgaaataaatgtcataagcttttggaaactacaatattactactac---agagtagatatagaactgatgaagcaatatcaatagcattctcctg |
205 |
Q |
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| T |
18189319 |
ccaactgaaataaatgtcataatcttttggaaccaacaatattactactactgcagagtagtta-agaactgaagaagcaatagcaatgacactatcctg |
18189221 |
T |
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| Q |
206 |
atatttattctaaaacaaatcattggatttcagtcaaaaaatctcctttcctttg |
260 |
Q |
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| T |
18189220 |
atatttattctaaaaaaaaacattggatttcagtccaaaaatctcctttcctttg |
18189166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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