View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2074_low_3 (Length: 239)

Name: NF2074_low_3
Description: NF2074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2074_low_3
NF2074_low_3
[»] chr5 (5 HSPs)
chr5 (4-222)||(14275914-14276132)
chr5 (6-222)||(37627013-37627226)
chr5 (53-136)||(37803601-37803684)
chr5 (151-222)||(37803554-37803625)
chr5 (6-43)||(37806299-37806336)
[»] chr4 (1 HSPs)
chr4 (4-222)||(11991733-11991951)
[»] chr7 (3 HSPs)
chr7 (6-222)||(2188165-2188380)
chr7 (6-222)||(1608434-1608649)
chr7 (6-222)||(19632525-19632739)
[»] chr1 (1 HSPs)
chr1 (6-222)||(41313554-41313770)
[»] chr2 (3 HSPs)
chr2 (6-222)||(19215811-19216026)
chr2 (59-188)||(19589608-19589736)
chr2 (112-215)||(10998966-10999065)
[»] chr3 (1 HSPs)
chr3 (6-222)||(8377847-8378062)
[»] chr8 (4 HSPs)
chr8 (6-220)||(451929-452142)
chr8 (7-222)||(7093762-7093976)
chr8 (7-222)||(7097495-7097709)
chr8 (10-222)||(29822942-29823152)
[»] scaffold0070 (1 HSPs)
scaffold0070 (6-222)||(58572-58788)
[»] scaffold0060 (1 HSPs)
scaffold0060 (151-222)||(16839-16910)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 14276132 - 14275914
Alignment:
Q  4 tggtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggat 103  Q
    ||||||||||||||||||| | |||||||||| ||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||     
T  14276132 tggtcggatactcattgtgtgtgatctattttttggagttaataatcatgtgtcgcatgcatacattcattgtcgcgtggtgcctataattggttgggac 14276033  T
Q  104 tcgaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataatt 203  Q
      ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14276032 ctgaagtcttgagtgcccataattggttggggcttatcgtttcttggttgagtgctcataattggttgaggctcgttgttttcttttggtgcccataatt 14275933  T
Q  204 ggttggaacccgtggggta 222  Q
     ||||| ||||||||||||    
T  14275932 agttgggacccgtggggta 14275914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 37627226 - 37627013
Alignment:
Q  6 gtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattc 105  Q
    |||| |||||||||||||| | ||||||| ||||||||||||   | |||||||||||||||||| |||||||  ||||||| ||||||||||||||| |    
T  37627226 gtcgcatactcattgtgagtggtctattt-gtggagttaatatgcaggtgtcgcatgcatacattcattgtcgcttggtgcccataattggttgggatcc 37627128  T
Q  106 gaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataattgg 205  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |  |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||    
T  37627127 gaagtcttgagtgcccataattggttgaggcttattgtttcct-tttgagtgctcataattggttgaggctcg-tgtcttcttttggtgcccataattgg 37627030  T
Q  206 ttggaacccgtggggta 222  Q
    |||| ||||||||||||    
T  37627029 ttgggacccgtggggta 37627013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 37803684 - 37803601
Alignment:
Q  53 gtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcgaagtcttgagtgcccataattggttggggc 136  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||    
T  37803684 gtgtcgcatgcatacattcattgtcgtgtggtgcccataattggttgggacccgaagtcttgagtgcccataattggttggggc 37803601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 37803625 - 37803554
Alignment:
Q  151 ttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataattggttggaacccgtggggta 222  Q
    |||||||| |||||||||||| |||   |||| |||||||| ||||||||||||||||||||||||||||||    
T  37803625 ttgagtgcccataattggttggggcatattgtcttcttttggtgcccataattggttggaacccgtggggta 37803554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 37806336 - 37806299
Alignment:
Q  6 gtcggatactcattgtgagcgatctattttgtggagtt 43  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  37806336 gtcggatactcattgtgagtggtctattttgtggagtt 37806299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 11991951 - 11991733
Alignment:
Q  4 tggtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggat 103  Q
    |||||| |||||||||||||| |||||||||||||||||||||||  |||||||||| |||| |||| |||||||  ||||||| ||||||||||||||     
T  11991951 tggtcgaatactcattgtgagtgatctattttgtggagttaataaccatgtgtcgcaagcatgcattcattgtcgcatggtgcccataattggttgggac 11991852  T
Q  104 tcgaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataatt 203  Q
     | |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| |||||||||||    
T  11991851 ccaaagtcttgagtgcccataattggttgaggcttatcgtttcttggttgagtgctcataattggttgaggctcgttgatttcatttggtgcccataatt 11991752  T
Q  204 ggttggaacccgtggggta 222  Q
    |||||| ||||||||||||    
T  11991751 ggttgggacccgtggggta 11991733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 2188165 - 2188380
Alignment:
Q  6 gtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattc 105  Q
    ||||||||||||||||||| | |||||||||||||||||||||  | |||||||||||||||||| ||||||| |||||||  ||||||||||||||  |    
T  2188165 gtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgctcataattggttgggaccc 2188264  T
Q  106 gaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataattgg 205  Q
    ||||||||||||||||||||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  2188265 gaagtcttgagtgcccataattggttggggcttattgtttcct-tttgagtgctcataattggttgaggctcgttgtcttcttttggtgcccataattgg 2188363  T
Q  206 ttggaacccgtggggta 222  Q
    |||| ||||||||||||    
T  2188364 ttgggacccgtggggta 2188380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 1608649 - 1608434
Alignment:
Q  6 gtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattc 105  Q
    ||||||||||||||||||| | ||||| |||||||||||||||  | |||||||||||||||||| || |||| |||||||| ||||||||||||||  |    
T  1608649 gtcggatactcattgtgagtggtctatcttgtggagttaataagcaggtgtcgcatgcatacattcatggtcgcgtggtgcccataattggttgggaccc 1608550  T
Q  106 gaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataattgg 205  Q
     |||||||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||    
T  1608549 taagtcttgagtgcccataattggttggggcttattgtttcct-tttgagtgctcataattggttgaggctctttgatttcttttggtgcccataattgg 1608451  T
Q  206 ttggaacccgtggggta 222  Q
    |||| ||||||||||||    
T  1608450 ttgggacccgtggggta 1608434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 19632739 - 19632525
Alignment:
Q  6 gtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattc 105  Q
    ||||||||||||||||||| | |||||||||||||||||||||  | |||||||||||||||||| | ||||| |||||||  ||||||||||||||  |    
T  19632739 gtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcagtgtcgcgtggtgctcataattggttgggaccc 19632640  T
Q  106 gaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataattgg 205  Q
    ||||||||||||| ||||||||||||||||||||| ||||| |  |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  19632639 gaagtcttgagtg-ccataattggttggggcttattgtttcct-tttgagtgctcataattggttgaggcttgttgtcttcttttggtgcccataattgg 19632542  T
Q  206 ttggaacccgtggggta 222  Q
    |||| ||||||||||||    
T  19632541 ttgggacccgtggggta 19632525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 41313770 - 41313554
Alignment:
Q  6 gtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattc 105  Q
    ||||||||||||||||||| | |||||||||||||||||||||  | |||||||||||||||||| ||||||| |||||||  ||||||||||||||  |    
T  41313770 gtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgctcataattggttgggaccc 41313671  T
Q  106 gaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgt-tttcttttgatgcccataattg 204  Q
    ||||||||||||||||||||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  41313670 gaagtcttgagtgcccataattggttggggcttattgtttcct-tttgagtgctcataattggttgaggctcgttgtctttcttttggtgcccataattg 41313572  T
Q  205 gttggaacccgtggggta 222  Q
    ||||| ||||||||||||    
T  41313571 gttgggacccgtggggta 41313554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 19215811 - 19216026
Alignment:
Q  6 gtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattc 105  Q
    ||||||||||||||||||| |  ||||||||||||||||||||  | |||| ||||||||||||| |||||||  ||||||| ||||||||||||||  |    
T  19215811 gtcggatactcattgtgagtggcctattttgtggagttaataagcaggtgttgcatgcatacattcattgtcgcatggtgcccataattggttgggaccc 19215910  T
Q  106 gaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataattgg 205  Q
    ||||||||||||||||||||||||||||||||||| ||||| |  |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  19215911 gaagtcttgagtgcccataattggttggggcttattgtttcct-tttgagtgctcataattggtttaggctcgttgtcttcttttggtgcccataattgg 19216009  T
Q  206 ttggaacccgtggggta 222  Q
    |||| ||||||||||||    
T  19216010 ttgggacccgtggggta 19216026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 19589608 - 19589736
Alignment:
Q  59 catgcatacatttattgtcgtgtggtgcctataattggttgggattcgaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgc 158  Q
    |||||||| ||| || |||||||| |||| |||||||||||| |  | ||||||||||||||| ||||||||||||| || |||||| |   |||||||     
T  19589608 catgcatatattcatcgtcgtgtgctgcccataattggttggaaccctaagtcttgagtgcccgtaattggttggggtttgtcgttt-tgttttgagtgt 19589706  T
Q  159 tcataattggttgaggctcgttgttttctt 188  Q
    ||||||||||||||| ||||||||||||||    
T  19589707 tcataattggttgagactcgttgttttctt 19589736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 10998966 - 10999065
Alignment:
Q  112 ttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataattggttggaa 211  Q
    ||||||| ||||||||||||| | |||||| |||| |  ||||| |||||||||| ||| ||  ||   ||||||||||| ||||||||||||||||| |    
T  10998966 ttgagtgtccataattggttgtgacttatcatttcct-tttgagagctcataattagtttagaatc---gttttcttttggtgcccataattggttggga 10999061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 8377847 - 8378062
Alignment:
Q  6 gtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattc 105  Q
    |||||||| ||||||||||   ||||||||||||||||||||   | |||||||||||||||||| ||||| | |||||||| ||||||||||||||  |    
T  8377847 gtcggatattcattgtgagttgtctattttgtggagttaatatgcaggtgtcgcatgcatacattcattgttgcgtggtgcccataattggttgggaccc 8377946  T
Q  106 gaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataattgg 205  Q
    ||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||| ||||| ||||||||| |||||||||||||    
T  8377947 gaagtcttgagtgcccataattggttggggcttattgtttccttg-tgagtgctcataattggttgaggcccgttgatttcttttggtgcccataattgg 8378045  T
Q  206 ttggaacccgtggggta 222  Q
    |||| ||||||||||||    
T  8378046 ttgggacccgtggggta 8378062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 452142 - 451929
Alignment:
Q  6 gtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattc 105  Q
    ||||| ||||||||  ||||| | | |||||||||||||||||| | ||||| |||||||||||| |||||||||||||||| ||||||||||||||  |    
T  452142 gtcggttactcattaagagcggtgttttttgtggagttaataatcaggtgtcacatgcatacattcattgtcgtgtggtgcccataattggttgggaccc 452043  T
Q  106 gaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataattgg 205  Q
    ||||||||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||| | ||||||| ||||||||| |||||||||||||    
T  452042 gaagtcttgagtgcccataattggttggggcttattgtttcct-tttgagtgctcataattggttgggactcgttgatttcttttggtgcccataattgg 451944  T
Q  206 ttggaacccgtgggg 220  Q
    |||| ||||||||||    
T  451943 ttgggacccgtgggg 451929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 7093976 - 7093762
Alignment:
Q  7 tcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcg 106  Q
    ||||||| ||||||||||   ||||||| ||||||||||||   | |||||||||||||||||| ||||| | |||||||| |||||||||| |||  ||    
T  7093976 tcggatattcattgtgagttgtctatttggtggagttaatatgcaggtgtcgcatgcatacattcattgttgcgtggtgcccataattggttaggacccg 7093877  T
Q  107 aagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataattggt 206  Q
    |||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  7093876 aagtcttgagtgcccataattggttggggcttattgtttccttg-tgagtgctcataattggttgaggctcgttgatttcttttggtgcccataattggt 7093778  T
Q  207 tggaacccgtggggta 222  Q
    ||| ||||||||||||    
T  7093777 tgggacccgtggggta 7093762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 7097709 - 7097495
Alignment:
Q  7 tcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcg 106  Q
    ||||||| ||||||||||   ||||||| ||||||||||||   | |||||||||||||||||| ||||| | |||||||| |||||||||| |||  ||    
T  7097709 tcggatattcattgtgagttgtctatttggtggagttaatatgcaggtgtcgcatgcatacattcattgttgcgtggtgcccataattggttaggacccg 7097610  T
Q  107 aagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataattggt 206  Q
    |||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  7097609 aagtcttgagtgcccataattggttggggcttattgtttccttg-tgagtgctcataattggttgaggctcgttgatttcttttggtgcccataattggt 7097511  T
Q  207 tggaacccgtggggta 222  Q
    ||| ||||||||||||    
T  7097510 tgggacccgtggggta 7097495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 29822942 - 29823152
Alignment:
Q  10 gatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcgaag 109  Q
    ||||||||||||||| | ||||||||||||||| |||||  | |||||||||||||||||| ||||||| |||||||| ||||||||||||||  |||||    
T  29822942 gatactcattgtgagtggtctattttgtggagt-aataagcaggtgtcgcatgcatacattcattgtcgcgtggtgcccataattggttgggacccgaag 29823040  T
Q  110 tcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataattggttgg 209  Q
    ||||||| ||||||||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||| ||||||||  |||||||||||| |||    
T  29823041 tcttgagcgcccataattggttggggcttattgtttcct-tttgagtgctcataattggttgaggctcgttgtcttcttttggcgcccataattggatgg 29823139  T
Q  210 aacccgtggggta 222  Q
     |||||| |||||    
T  29823140 gacccgtagggta 29823152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 58788 - 58572
Alignment:
Q  6 gtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattc 105  Q
    ||||| |||||||| |||| | | | ||||||||| |||||||  |  ||||||||||||||||| ||||||| |||||||| ||||||||||||||  |    
T  58788 gtcggttactcattatgagaggtgttttttgtggaattaataaccagctgtcgcatgcatacattcattgtcgcgtggtgcccataattggttgggaccc 58689  T
Q  106 gaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataattgg 205  Q
    ||||||||||||||||||||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  58688 gaagtcttgagtgcccataattggttggggcttattgtttcctttttgagtgctcataattggttgaggctcgttgtcttcttttggtgcccataattgg 58589  T
Q  206 ttggaacccgtggggta 222  Q
    |||| || |||||||||    
T  58588 ttgggacacgtggggta 58572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 16839 - 16910
Alignment:
Q  151 ttgagtgctcataattggttgaggctcgttgttttcttttgatgcccataattggttggaacccgtggggta 222  Q
    |||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||| ||||||||||||    
T  16839 ttgagtgctcataattggttgaggttcgttgatttcttttggtgcccataattggttgggacccgtggggta 16910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University