View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20750_high_6 (Length: 259)

Name: NF20750_high_6
Description: NF20750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20750_high_6
NF20750_high_6
[»] chr4 (14 HSPs)
chr4 (3-259)||(37715611-37715867)
chr4 (163-228)||(6234928-6234992)
chr4 (164-259)||(10181003-10181098)
chr4 (164-243)||(32154717-32154796)
chr4 (28-153)||(6234320-6234450)
chr4 (172-228)||(53816441-53816497)
chr4 (164-227)||(19631355-19631418)
chr4 (164-227)||(25644406-25644469)
chr4 (164-230)||(4264178-4264244)
chr4 (164-230)||(5735315-5735381)
chr4 (164-259)||(27976721-27976819)
chr4 (164-224)||(39193962-39194022)
chr4 (166-218)||(41790400-41790451)
chr4 (163-227)||(55997161-55997225)
[»] chr1 (16 HSPs)
chr1 (28-147)||(8266279-8266398)
chr1 (28-153)||(43590373-43590493)
chr1 (164-223)||(23435715-23435774)
chr1 (163-224)||(43590982-43591042)
chr1 (164-259)||(27990866-27990959)
chr1 (196-259)||(33034197-33034261)
chr1 (164-259)||(32495067-32495157)
chr1 (164-230)||(32988500-32988566)
chr1 (164-230)||(48219793-48219859)
chr1 (164-230)||(48264962-48265028)
chr1 (164-259)||(51924794-51924887)
chr1 (167-227)||(3898725-3898785)
chr1 (167-227)||(16265080-16265140)
chr1 (164-224)||(23330502-23330562)
chr1 (167-227)||(26441684-26441744)
chr1 (164-224)||(38737529-38737589)
[»] chr3 (17 HSPs)
chr3 (28-153)||(35764254-35764378)
chr3 (28-153)||(46763415-46763535)
chr3 (163-228)||(35764860-35764924)
chr3 (165-259)||(9794327-9794421)
chr3 (163-224)||(46764025-46764085)
chr3 (199-251)||(35322230-35322282)
chr3 (167-227)||(4238774-4238834)
chr3 (167-227)||(10435181-10435241)
chr3 (164-227)||(17052911-17052974)
chr3 (196-258)||(8440649-8440711)
chr3 (164-230)||(8559156-8559222)
chr3 (164-230)||(18659096-18659162)
chr3 (164-230)||(21907040-21907106)
chr3 (164-230)||(28690560-28690626)
chr3 (164-230)||(45167343-45167409)
chr3 (164-224)||(9776650-9776710)
chr3 (164-224)||(15514380-15514440)
[»] chr2 (6 HSPs)
chr2 (28-153)||(21271250-21271370)
chr2 (165-259)||(19192810-19192904)
chr2 (163-215)||(21271857-21271908)
chr2 (164-230)||(4045384-4045450)
chr2 (166-259)||(25786577-25786671)
chr2 (164-230)||(44330428-44330494)
[»] chr5 (6 HSPs)
chr5 (164-259)||(32300585-32300680)
chr5 (164-259)||(21961242-21961337)
chr5 (167-227)||(39405811-39405871)
chr5 (201-259)||(966076-966134)
chr5 (167-227)||(22613863-22613923)
chr5 (164-243)||(32381949-32382029)
[»] scaffold0294 (1 HSPs)
scaffold0294 (164-259)||(12597-12692)
[»] chr8 (7 HSPs)
chr8 (164-259)||(148178-148272)
chr8 (163-259)||(25173820-25173916)
chr8 (164-230)||(38739701-38739767)
chr8 (164-228)||(42785944-42786008)
chr8 (164-230)||(37709943-37710009)
chr8 (167-227)||(18809323-18809383)
chr8 (167-227)||(31127959-31128019)
[»] chr7 (11 HSPs)
chr7 (196-259)||(42493813-42493876)
chr7 (201-259)||(46074532-46074590)
chr7 (164-230)||(4033335-4033401)
chr7 (164-259)||(9821101-9821199)
chr7 (164-259)||(10723026-10723124)
chr7 (164-223)||(18795291-18795350)
chr7 (166-259)||(29255392-29255483)
chr7 (164-230)||(47081024-47081090)
chr7 (167-227)||(10464269-10464329)
chr7 (167-227)||(35500901-35500961)
chr7 (167-227)||(36643209-36643269)
[»] chr6 (3 HSPs)
chr6 (164-230)||(17417568-17417634)
chr6 (167-229)||(16434682-16434744)
chr6 (164-230)||(22020320-22020386)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 37715867 - 37715611
Alignment:
Q  3 tgcgggtgcactaacatgttttgacgactttgcttattattaattgatcatcagttaactacaaatgctatatacatattacttaatagtaaatgtaatt 102  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37715867 tgcgggtgcagtaacatgtttggacgactttgcttattattaattgatcatctgttaactacaaatgctatatacatattacttaatagtaaatgtaatt 37715768  T
Q  103 catccattactcttctaaaagaaaagtgtaattcataacttttttcttagaaaagtatgcaaaattttcataattatttttaattgatgatttaagatat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37715767 catccattactcttctaaaagaaaagtgtaattcataacttttttcttagaaaagtatgcaaaattttcataattatttttaatagatgatttaagatat 37715668  T
Q  203 taaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  37715667 taaagataaaaaatatacattggtatgtacgacagaatcaactgtgtcacttaatat 37715611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 6234928 - 6234992
Alignment:
Q  163 aaaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtat 228  Q
    ||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||| |||||||||    
T  6234928 aaaattttcataattctttt-aatagataatttaagatattaaagataaaaaatatgcattggtat 6234992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 10181098 - 10181003
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    |||||||||||||| ||| |||| ||| ||| || ||||||||||||||| ||||  ||||||||||  |||||| |||| ||| ||| |||||||    
T  10181098 aaattttcataattttttctaatagataattgaaaatattaaagataaaacatatgtattggtatgtgtgacagagtcaactgtatcaattaatat 10181003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 32154796 - 32154717
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgtacgacagactcaa 243  Q
    |||||||||||||| ||| |||| ||| ||| || |||||| |||||||| ||||||||||||||||  |||||| ||||    
T  32154796 aaattttcataattttttctaatagataattaaatatattatagataaaatatatacattggtatgtgagacagagtcaa 32154717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 6234320 - 6234450
Alignment:
Q  28 gactttgcttattattaattgatca--tcagttaactacaaatgctatatacatattacttaatagtaaatgtaattcatccattactcttctaaaagaa 125  Q
    |||||||||||||||||||| || |  ||| |||||  ||||||| |||||||||||||||  |||||| |   ||||||  ||||| ||||| ||||||    
T  6234320 gactttgcttattattaattaattaaatcaattaacggcaaatgccatatacatattactttctagtaattc--attcattaattacccttctgaaagaa 6234417  T
Q  126 aagtgta-----attcataacttttttcttaga 153  Q
    |||||||     |||||||||||||||||||||    
T  6234418 aagtgtacagtaattcataacttttttcttaga 6234450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 53816497 - 53816441
Alignment:
Q  172 ataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtat 228  Q
    |||||| |||||||| ||| ||| || |||||||||||||||||||||||| |||||    
T  53816497 ataattttttttaatggataattaaaaatattaaagataaaaaatatacatcggtat 53816441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 19631418 - 19631355
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    |||||||||||||| |||||||| ||  ||| ||||||| |||||||||| |||| ||||||||    
T  19631418 aaattttcataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggta 19631355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 25644469 - 25644406
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    |||||||||||||| |||||||| ||  ||| ||||||| |||||||||| |||| ||||||||    
T  25644469 aaattttcataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggta 25644406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 4264244 - 4264178
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| |||||| |||||| | ||| ||| ||||||| |||||||||| |||| |||||||||||    
T  4264244 aaatttttataattttttttactagataattgaagatatcaaagataaaacatatgcattggtatgt 4264178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 5735381 - 5735315
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| |||||| |||||||| ||  ||| ||||||| |||||||||| |||| |||||||||||    
T  5735381 aaatttttataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggtatgt 5735315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 27976721 - 27976819
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatac---attggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    |||||||||||||| ||| |||  ||  ||| |||||||||||||||||| |||| |   ||||||||||  |||| | |||| |||||||||||||||    
T  27976721 aaattttcataattttttataaaagagaattgaagatattaaagataaaacatatgcattattggtatgtgtgacaaaatcaactgtgtcacttaatat 27976819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 39194022 - 39193962
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattg 224  Q
    |||||||||||||| |||||||| ||  ||  |||||||||||||||||| |||| |||||    
T  39194022 aaattttcataattgtttttaatagagaatgaaagatattaaagataaaagatatgcattg 39193962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 41790451 - 41790400
Alignment:
Q  166 attttcataattatttttaattgatgatttaagatattaaagataaaaaatat 218  Q
    |||||||||||| |||||||| ||| ||| ||||||||||| |||||||||||    
T  41790451 attttcataatt-tttttaatagataattaaagatattaaaaataaaaaatat 41790400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 55997225 - 55997161
Alignment:
Q  163 aaaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    ||||||||||||||| |||||||| ||  ||| ||||||| ||||||||||  ||| ||||||||    
T  55997225 aaaattttcataattttttttaatagagaattgaagatatcaaagataaaacgtatgcattggta 55997161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 8266398 - 8266279
Alignment:
Q  28 gactttgcttattattaattgat--catcagttaactacaaatgctatatacatattacttaatagtaaatgtaattcatccattactcttctaaaagaa 125  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| || ||||||| |   |||||| ||||| ||||||||||||     
T  8266398 gactttgcttattattaattgattacattagttaactacaaatgctatatacatattagttcatagtaattc--attcattcattattcttctaaaagag 8266301  T
Q  126 aagtgtaattcataactttttt 147  Q
    ||||||||||||||||||||||    
T  8266300 aagtgtaattcataactttttt 8266279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 43590373 - 43590493
Alignment:
Q  28 gactttgcttattattaattgatcatcagttaactacaaatgctatatacatattacttaatagtaaatgtaattcatccattactcttctaaaagaaaa 127  Q
    ||||||| |||||||||||| || |   ||||||  |||||| ||||||||||||||||  |||||| |   ||||||   |||| ||||||||||||||    
T  43590373 gactttgtttattattaattaatta---gttaacggcaaatgttatatacatattactttctagtaattc--attcattagttacccttctaaaagaaaa 43590467  T
Q  128 gtgtaattcataacttttttcttaga 153  Q
    ||||||||||||||||||||||||||    
T  43590468 gtgtaattcataacttttttcttaga 43590493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 23435715 - 23435774
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacatt 223  Q
    |||||||||||||| |||| ||| ||| ||| ||||||||||||||||||||||||||||    
T  23435715 aaattttcataatttttttaaatagataattaaagatattaaagataaaaaatatacatt 23435774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 43590982 - 43591042
Alignment:
Q  163 aaaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattg 224  Q
    ||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||| |||||    
T  43590982 aaaattttcataatt-ttattaatagataatttaagatattaaagataaaaaatatgcattg 43591042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 27990866 - 27990959
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    |||||||||||||| |||| ||| ||  ||| |||||||||||||| |||| |||||||||||||||  |||||  |||| |||||||||||||||    
T  27990866 aaattttcataatt-ttttaaatagagaattgaagatattaaagatgaaaa-tatacattggtatgtgtgacagcgtcaactgtgtcacttaatat 27990959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 33034197 - 33034261
Alignment:
Q  196 aagatattaaagataaaaaa-tatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    |||||||||||||||||||| ||| |||||||||||  |||||| ||||  ||||||||||||||    
T  33034197 aagatattaaagataaaaaaatatgcattggtatgtgtgacagagtcaaccgtgtcacttaatat 33034261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 32495157 - 32495067
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    |||||||||||||| ||| |||  || |||| |||||||||||||| |||||||| |||||   |||  |||||| ||||||||||||||| ||||    
T  32495157 aaattttcataattttttataacagaggattgaagatattaaagatgaaaaatatgcattg---tgt--gacagagtcaattgtgtcacttcatat 32495067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 32988500 - 32988566
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| |||||| |||||||| ||  ||| ||||||| |||||||||| |||| |||||||||||    
T  32988500 aaatttttataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggtatgt 32988566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 48219793 - 48219859
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| ||||||||||||| | ||  ||| ||||||| |||||||||| |||| |||||||||||    
T  48219793 aaatttttataattatttttagtagagaattgaagatatcaaagataaaacatatgcattggtatgt 48219859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 48264962 - 48265028
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| |||||| |||||| | ||  ||| |||||||||||||||||| |||| |||||||||||    
T  48264962 aaatttttataattttttttagtagagaattgaagatattaaagataaaacatatgcattggtatgt 48265028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 51924887 - 51924794
Alignment:
Q  164 aaattttcataattatttt-taattgatgatttaagatattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    |||||||||||||| |||| |||| ||| ||| |||||||||||||||||   ||| |||||||||||  || ||| |||| |||||| ||||||||    
T  51924887 aaattttcataatttttttgtaatagataattaaagatattaaagataaa---tatgcattggtatgtgtgatagagtcaactgtgtcccttaatat 51924794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 3898725 - 3898785
Alignment:
Q  167 ttttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    ||||||||||| |||||||| ||  ||| ||||||| |||||||||| |||| ||||||||    
T  3898725 ttttcataattttttttaatagaaaattgaagatatcaaagataaaacatatgcattggta 3898785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 16265140 - 16265080
Alignment:
Q  167 ttttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    ||||||||||| |||||||| ||  ||| ||||||| |||||||||| |||| ||||||||    
T  16265140 ttttcataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggta 16265080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 23330562 - 23330502
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattg 224  Q
    |||||||||||||| |||||||| ||  ||| ||||||| |||||||||| |||| |||||    
T  23330562 aaattttcataattttttttaatagagaattgaagatatgaaagataaaacatatgcattg 23330502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 26441744 - 26441684
Alignment:
Q  167 ttttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    ||||||||||| |||||||| ||  ||| ||||||| |||||||||| |||| ||||||||    
T  26441744 ttttcataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggta 26441684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 38737529 - 38737589
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattg 224  Q
    |||||||||||||| ||||||||  |  ||| ||||||||||| ||||||||||| |||||    
T  38737529 aaattttcataattttttttaataaagaattaaagatattaaatataaaaaatatgcattg 38737589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 35764254 - 35764378
Alignment:
Q  28 gactttgcttattattaattgatca--tcagttaactacaaatgctatatacatattacttaatagtaaatgtaattcatccattactcttctaaaagaa 125  Q
    ||||||| |||||||||||| || |  |||||||||  |||||||||||||||||||||||  |||||| |   ||||||  ||||| ||||||||||||    
T  35764254 gactttgtttattattaattaattaaatcagttaacggcaaatgctatatacatattactttctagtaattc--attcattaattac-cttctaaaagaa 35764350  T
Q  126 aagtgtaattcataacttttttcttaga 153  Q
    ||||||||||||||||||||||||||||    
T  35764351 aagtgtaattcataacttttttcttaga 35764378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 46763415 - 46763535
Alignment:
Q  28 gactttgcttattattaattgatcatcagttaactacaaatgctatatacatattacttaatagtaaatgtaattcatccattactcttctaaaagaaaa 127  Q
    ||||||| |||||||||||| || |   ||||||| |||||||||||||||||||||||  |||||| |   ||||||   |||| ||||||||||||||    
T  46763415 gactttgtttattattaattaatta---gttaactgcaaatgctatatacatattactttctagtaattc--attcattagttacccttctaaaagaaaa 46763509  T
Q  128 gtgtaattcataacttttttcttaga 153  Q
    ||||||||||||||||||||||||||    
T  46763510 gtgtaattcataacttttttcttaga 46763535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 35764860 - 35764924
Alignment:
Q  163 aaaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtat 228  Q
    ||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||| |||||||||    
T  35764860 aaaattttcataatt-ttattaatagataatttaagatattaaagataaaaaatatgcattggtat 35764924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 259
Target Start/End: Original strand, 9794327 - 9794421
Alignment:
Q  165 aattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    ||||||||| ||| ||| |||| ||| ||| ||||||||||||||||||| ||| ||||| |||||  || ||| |||| |||||||||||||||    
T  9794327 aattttcattattttttctaatagataattgaagatattaaagataaaaattattcattgatatgtgtgatagagtcaactgtgtcacttaatat 9794421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 46764025 - 46764085
Alignment:
Q  163 aaaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattg 224  Q
    ||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||| |||||    
T  46764025 aaaattttcataatt-ttattaatagataatttaagatattaaagataaaaaatatgcattg 46764085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 35322282 - 35322230
Alignment:
Q  199 atattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtca 251  Q
    ||||||||||||||||||||| |||||||||| ||||||| |||| |||||||    
T  35322282 atattaaagataaaaaatatatattggtatgtgcgacagagtcaactgtgtca 35322230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 4238774 - 4238834
Alignment:
Q  167 ttttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    ||||||||||| |||||||| ||  ||| |||||||||||||||||| |||| ||||||||    
T  4238774 ttttcataattttttttaatagagaattgaagatattaaagataaaacatatgcattggta 4238834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 10435241 - 10435181
Alignment:
Q  167 ttttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    ||||||||||| |||||||| ||  ||| |||||||||||||||||| |||| ||||||||    
T  10435241 ttttcataattttttttaatagagaattgaagatattaaagataaaacatatgcattggta 10435181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 17052974 - 17052911
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    |||||||||||||| |||||||| ||  ||| ||||||| |||||||||| |||| ||||||||    
T  17052974 aaattttcataattttttttaatagaaaattgaagatatcaaagataaaacatatgcattggta 17052911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 8440649 - 8440711
Alignment:
Q  196 aagatattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaata 258  Q
    ||||| |||||||||||||||||||||||||||    |||||| |||| ||| ||||||||||    
T  8440649 aagatgttaaagataaaaaatatacattggtataagtgacagagtcaactgtatcacttaata 8440711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 8559156 - 8559222
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| |||||| |||||| | ||  ||| |||||||||||||||||| |||| |||||||||||    
T  8559156 aaatttttataattttttttagtagagaattgaagatattaaagataaaacatatgcattggtatgt 8559222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 18659162 - 18659096
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| |||||| |||||||| ||  ||| ||||||| |||||||||| |||| |||||||||||    
T  18659162 aaatttttataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggtatgt 18659096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 21907106 - 21907040
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| |||||| |||||| | ||| ||| ||||||| |||||||||| |||| |||||||||||    
T  21907106 aaatttttataattttttttactagataattgaagatatcaaagataaaacatatgcattggtatgt 21907040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 28690626 - 28690560
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    |||||||||||||| |||||| | ||  ||| ||||||| |||||||||| |||| |||||||||||    
T  28690626 aaattttcataattttttttagtagagcattgaagatatcaaagataaaacatatgcattggtatgt 28690560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 45167409 - 45167343
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| |||||| |||||||| ||  ||| ||||||| |||||||||| |||| |||||||||||    
T  45167409 aaatttttataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggtatgt 45167343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 9776650 - 9776710
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattg 224  Q
    |||||||||| ||| ||| |||| ||| ||| ||||||||||||||||||| ||| |||||    
T  9776650 aaattttcattattttttctaatagataattgaagatattaaagataaaaattattcattg 9776710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 15514440 - 15514380
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattg 224  Q
    ||||||||||||||  || |||| ||| ||| |||||| || |||||||||||||||||||    
T  15514440 aaattttcataatttattctaatagataattaaagataatatagataaaaaatatacattg 15514380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 21271250 - 21271370
Alignment:
Q  28 gactttgcttattattaattgatcatcagttaactacaaatgctatatacatattacttaatagtaaatgtaattcatccattactcttctaaaagaaaa 127  Q
    ||||||| |||||||||||| || |   ||||||  |||||||||||||||||||||||  |||||| |   ||||||   |||| ||||||||||||||    
T  21271250 gactttgtttattattaattaatta---gttaacggcaaatgctatatacatattactttctagtaattc--attcattagttacccttctaaaagaaaa 21271344  T
Q  128 gtgtaattcataacttttttcttaga 153  Q
    |||||||||||||||||||| |||||    
T  21271345 gtgtaattcataacttttttgttaga 21271370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 259
Target Start/End: Original strand, 19192810 - 19192904
Alignment:
Q  165 aattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    ||||||||||||| ||| |||| ||| ||| ||||||||||||||||||||||||||||| ||| |  |||||| |||| | | |||||||||||    
T  19192810 aattttcataattttttataatagataattaaagatattaaagataaaaaatatacattgatatatgtgacagagtcaagtatatcacttaatat 19192904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 21271857 - 21271908
Alignment:
Q  163 aaaattttcataattatttttaattgatgatttaagatattaaagataaaaaa 215  Q
    ||||||||||||||| || ||||| ||| ||||||||||||||||||||||||    
T  21271857 aaaattttcataatt-ttattaatagataatttaagatattaaagataaaaaa 21271908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 4045384 - 4045450
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| |||||| |||||||| ||  ||| ||||||| |||||||||| |||| |||||||||||    
T  4045384 aaatttttataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggtatgt 4045450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 259
Target Start/End: Complemental strand, 25786671 - 25786577
Alignment:
Q  166 attttcataattatttttaattgatgatttaagatattaaagataaaaaa-tatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    ||||| |||||| ||| |||| ||  ||| |||||||||| ||||||||| ||| |||||||||||  |||||| |||| ||||||| |||||||    
T  25786671 atttttataattttttataatagagaattgaagatattaaggataaaaaaatatgcattggtatgtgggacagagtcaactgtgtcatttaatat 25786577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 44330494 - 44330428
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| |||||| |||||||| ||  ||| ||||||| |||||||||| |||| |||||||||||    
T  44330494 aaattttgataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggtatgt 44330428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 32300680 - 32300585
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    |||||||||||||| ||| |||| ||| ||| ||||||||||||||||||||||| ||||| ||| |  |||||| |||| ||||||| |||||||    
T  32300680 aaattttcataattttttataatagataattaaagatattaaagataaaaaatatgcattgatatttgtgacagagtcaactgtgtcatttaatat 32300585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 21961337 - 21961242
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    ||||||| |||||| ||| |||| ||| ||| |||||||||||||||||| ||||  |||| |||||  |||||| |||| ||| |||||||||||    
T  21961337 aaattttaataattttttctaatagataattaaagatattaaagataaaacatatgaattgatatgtgtgacagagtcaactgtatcacttaatat 21961242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 39405871 - 39405811
Alignment:
Q  167 ttttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    ||||||||||| |||||||| ||  ||| |||||||||||||||||| |||| ||||||||    
T  39405871 ttttcataattttttttaatagagaattgaagatattaaagataaaacatatgcattggta 39405811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 966076 - 966134
Alignment:
Q  201 attaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    |||||||||||||||||| |||| |||| || |||| | |||| |||||||||||||||    
T  966076 attaaagataaaaaatatgcattagtatatatgacaaagtcaactgtgtcacttaatat 966134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 22613863 - 22613923
Alignment:
Q  167 ttttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    ||||||||||| |||||||| ||  ||| ||||||| |||||||||| |||| ||||||||    
T  22613863 ttttcataattttttttaatagaaaattgaagatatcaaagataaaacatatgcattggta 22613923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 32382029 - 32381949
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagat-aaaaaatatacattggtatgtacgacagactcaa 243  Q
    |||||||||||| | ||| |||||||  ||| ||||||||||| || |||||| |||||||| |||||| |||||| ||||    
T  32382029 aaattttcataagtttttctaattgagaattaaagatattaaaaataaaaaaacatacattgatatgtatgacagagtcaa 32381949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 12597 - 12692
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    |||||||||||||| ||| |||| ||  ||| |||||||||| ||||||| |||| ||||||||| |  |||| | ||||||||||||||||||||    
T  12597 aaattttcataattttttctaatagagaattgaagatattaacgataaaacatatgcattggtatatgtgacaaaatcaattgtgtcacttaatat 12692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 148178 - 148272
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    |||||||||||||| |||||||| ||| ||| || ||||||||||||||||||||  |||| |||||  |||||| |||| ||| |||||||||||    
T  148178 aaattttcataatt-tttttaatagataattaaaaatattaaagataaaaaatatgtattgatatgtgtgacagaatcaactgtatcacttaatat 148272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 259
Target Start/End: Original strand, 25173820 - 25173916
Alignment:
Q  163 aaaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    ||||||||||||| | |||||||| ||  ||| |||||||||||||||||| ||||  |||||||||   |||||| |||| |||||||| ||||||    
T  25173820 aaaattttcataaatttttttaatagaaaattgaagatattaaagataaaacatatgtattggtatgcgtgacagaatcaactgtgtcacataatat 25173916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 38739767 - 38739701
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| |||||| |||||||| ||  ||| |||||||||||||||||| |||| |||||||||||    
T  38739767 aaatttttataattttttttaatagagaattgaagatattaaagataaaacatatgcattggtatgt 38739701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 42786008 - 42785944
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtat 228  Q
    |||||||||||||| |||| ||| ||| ||| ||| ||||||||||||| ||||| |||||||||    
T  42786008 aaattttcataatttttttaaatagataattaaagttattaaagataaataatatgcattggtat 42785944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 37710009 - 37709943
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| |||| | |||||||| ||  ||| ||||||| |||||||||| ||||||||||||||||    
T  37710009 aaatttttataagtttttttaatagagaattgaagatatcaaagataaaacatatacattggtatgt 37709943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 18809383 - 18809323
Alignment:
Q  167 ttttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    ||||||||||| |||||||| ||  ||| ||||||| |||||||||| |||| ||||||||    
T  18809383 ttttcataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggta 18809323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 31127959 - 31128019
Alignment:
Q  167 ttttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    ||||||||||| |||||||| ||  ||| ||||||| |||||||||| |||| ||||||||    
T  31127959 ttttcataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggta 31128019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 42493813 - 42493876
Alignment:
Q  196 aagatattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    ||||||||||||||||||||||||||||| |||||  |||||| |||| ||||||| |||||||    
T  42493813 aagatattaaagataaaaaatatacattgatatgtgtgacagagtcaactgtgtcatttaatat 42493876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 46074532 - 46074590
Alignment:
Q  201 attaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    |||||||||||||||||||||||| ||||| || |||| |||| |||||||||||||||    
T  46074532 attaaagataaaaaatatacattgctatgtgcgtcagagtcaactgtgtcacttaatat 46074590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 4033401 - 4033335
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    |||||||||||||| |||| ||| ||| ||| || |||||||||||||||||||| ||||| |||||    
T  4033401 aaattttcataatttttttaaatagataattaaatatattaaagataaaaaatatgcattgatatgt 4033335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 9821199 - 9821101
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataa---aaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    |||||||||||||| ||| |||| ||| ||| |||||||| |||||||   |||| || |||||||||||  ||| || ||||||||||||| ||||||    
T  9821199 aaattttcataattttttctaatagataattaaagatatttaagataaaaaaaaacatgcattggtatgtgtgacggagtcaattgtgtcacataatat 9821101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 10723124 - 10723026
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataa---aaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    |||||||||||||| ||| |||| ||| ||| |||||||| |||||||   |||| || |||||||||||  ||| || ||||||||||||| ||||||    
T  10723124 aaattttcataattttttctaatagataattaaagatatttaagataaaaaaaaacatgcattggtatgtgtgacggagtcaattgtgtcacataatat 10723026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 18795291 - 18795350
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacatt 223  Q
    |||||||||||||| |||||| | ||  ||||||||||| |||||||||| |||||||||    
T  18795291 aaattttcataattttttttagtagagaatttaagatatcaaagataaaacatatacatt 18795350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 259
Target Start/End: Original strand, 29255392 - 29255483
Alignment:
Q  166 attttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgtacgacagactcaattgtgtcacttaatat 259  Q
    ||||||||||||  ||||||| ||| ||| ||||||||||| ||||||| |||  |||| |||||| |||||| |||| | |||||||| ||||    
T  29255392 attttcataatt--ttttaatagataattaaagatattaaaaataaaaattatgtattgatatgtatgacagagtcaagtatgtcacttgatat 29255483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 47081090 - 47081024
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| |||||| |||||| | ||  ||||||||||| |||||||||| |||| |||||||||||    
T  47081090 aaatttttataattttttttagtagagaatttaagatatcaaagataaaacatatgcattggtatgt 47081024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 10464269 - 10464329
Alignment:
Q  167 ttttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    ||||||||||| |||||||| ||  ||| ||||||| |||||||||| |||| ||||||||    
T  10464269 ttttcataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggta 10464329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 35500901 - 35500961
Alignment:
Q  167 ttttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    ||||||||||| |||||||| ||  ||| ||||||| |||||||||| |||| ||||||||    
T  35500901 ttttcataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggta 35500961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 36643269 - 36643209
Alignment:
Q  167 ttttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggta 227  Q
    ||||||||||| |||||||| ||  ||| ||||||| |||||||||| |||| ||||||||    
T  36643269 ttttcataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggta 36643209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 17417634 - 17417568
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    |||||||||||||| |||  ||| ||| ||| |||||||||||| |||||||||||||| |||||||    
T  17417634 aaattttcataattttttcaaatagataattaaagatattaaagttaaaaaatatacatcggtatgt 17417568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 16434682 - 16434744
Alignment:
Q  167 ttttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatg 229  Q
    ||||||||||| |||  ||| ||| ||| |||||||||||||||| |||||| ||||||||||    
T  16434682 ttttcataattttttcaaatagataattaaagatattaaagataagaaatatgcattggtatg 16434744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 22020386 - 22020320
Alignment:
Q  164 aaattttcataattatttttaattgatgatttaagatattaaagataaaaaatatacattggtatgt 230  Q
    ||||||| |||||| |||||||| ||  ||| ||||||| |||||||||| |||| |||||||||||    
T  22020386 aaattttgataattttttttaatagagaattgaagatatcaaagataaaacatatgcattggtatgt 22020320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University