View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20750_low_3 (Length: 394)
Name: NF20750_low_3
Description: NF20750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20750_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 372
Target Start/End: Complemental strand, 33162309 - 33161942
Alignment:
| Q |
11 |
cagagactagaagggaaggggataggcagtgggaaatttggtggtgccgccggacggcaacggcggcgagggagaggctcgcagccttttaggaggagtc |
110 |
Q |
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| T |
33162309 |
cagagactagaagggaaggggataggctgtgggaaatttggtggtgccgccggacggcaacggcggcgagggagaggctcgcagccttttaggaggagtc |
33162210 |
T |
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| Q |
111 |
tttgagagagaatctcgtcgtctggacatgatccattaacgtcgtaggacatgaaactgcggatatcgtcgggaaatagggtacatgcactgccggcggg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33162209 |
tttgagagagaatctcgtcgtctggacatgatccattaacgtcgtaggacatgaagctgcggatatcgtcgggaaatagggtacatgcactgccggcggg |
33162110 |
T |
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| Q |
211 |
agggtggacggtgtcagagttgaagtttcggttgaaaccgagtgggagtttttgtggtgacgtagaagcaaagaattctggtgggaggttactgtcgccg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||| |
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| T |
33162109 |
agggtggacggtgtcagagttgaagtttcggttgaaaccgagtgggagtttttgtggtgacgtagaagcaaagaattccggtgggaggtaaccgtcgccg |
33162010 |
T |
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| Q |
311 |
gcgctgtcttcagcggcggtggctg------tggcggtggttgtgaaatttggtgtacacgtggagga |
372 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33162009 |
gcgctgtcttcagcggcggtggctgtggctgtggcggtggttgtgaaatttggtgtacacgtggagga |
33161942 |
T |
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