View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20750_low_5 (Length: 377)

Name: NF20750_low_5
Description: NF20750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20750_low_5
NF20750_low_5
[»] chr8 (4 HSPs)
chr8 (226-360)||(39625674-39625805)
chr8 (226-360)||(39635224-39635355)
chr8 (151-258)||(39628064-39628171)
chr8 (151-258)||(39637614-39637721)
[»] chr7 (4 HSPs)
chr7 (79-146)||(11668803-11668873)
chr7 (79-141)||(11668446-11668511)
chr7 (79-134)||(8648888-8648946)
chr7 (90-145)||(15090393-15090451)
[»] chr5 (2 HSPs)
chr5 (79-146)||(10731440-10731510)
chr5 (79-121)||(16364750-16364792)
[»] chr3 (3 HSPs)
chr3 (83-141)||(18194492-18194553)
chr3 (83-146)||(47257216-47257282)
chr3 (77-146)||(2063580-2063652)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 226 - 360
Target Start/End: Complemental strand, 39625805 - 39625674
Alignment:
Q  226 attccaccaaaaagacgtattcagttacaaaataccgaatttggcggaattttatctcttatatgcatcaaactaaacggattacaaaaatatagggaaa 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||    
T  39625805 attccaccaaaaagacgtattcagttacaaaataccgaatttggcggaattttatctcttat---catcaaactaaacggattacaaaaatataggaaaa 39625709  T
Q  326 aagaagttctagtgttatcataactaaccagtaat 360  Q
    |||||||||||||||||||||||||||||||||||    
T  39625708 aagaagttctagtgttatcataactaaccagtaat 39625674  T

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Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 226 - 360
Target Start/End: Complemental strand, 39635355 - 39635224
Alignment:
Q  226 attccaccaaaaagacgtattcagttacaaaataccgaatttggcggaattttatctcttatatgcatcaaactaaacggattacaaaaatatagggaaa 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||    
T  39635355 attccaccaaaaagacgtattcagttacaaaataccgaatttggcggaattttatctcttat---catcaaactaaacggattacaaaaatataggaaaa 39635259  T
Q  326 aagaagttctagtgttatcataactaaccagtaat 360  Q
    |||||||||||||||||||||||||||||||||||    
T  39635258 aagaagttctagtgttatcataactaaccagtaat 39635224  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 39628171 - 39628064
Alignment:
Q  151 aaaaaatagaacgtccgagaaataaatagatgggagaaaataatagtt-attctatttcactaatctgttactattattccaccaaaa-agacgtattca 248  Q
    |||||||||||||  ||| ||||| ||||||||||  ||||||||||| ||||||||||||||||||||||| |||||||||| |||| |||  ||||||    
T  39628171 aaaaaatagaacgcgcgaaaaatagatagatggga--aaataatagtttattctatttcactaatctgttacgattattccacaaaaagagaaatattca 39628074  T
Q  249 gttacaaaat 258  Q
    ||||||||||    
T  39628073 gttacaaaat 39628064  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 39637721 - 39637614
Alignment:
Q  151 aaaaaatagaacgtccgagaaataaatagatgggagaaaataatagtt-attctatttcactaatctgttactattattccaccaaaa-agacgtattca 248  Q
    |||||||||||||  ||| ||||| ||||||||||  ||||||||||| ||||||||||||||||||||||| |||||||||| |||| |||  ||||||    
T  39637721 aaaaaatagaacgcgcgaaaaatagatagatggga--aaataatagtttattctatttcactaatctgttacgattattccacaaaaagagaaatattca 39637624  T
Q  249 gttacaaaat 258  Q
    ||||||||||    
T  39637623 gttacaaaat 39637614  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 11668873 - 11668803
Alignment:
Q  79 attgttttgaactctttagatatttagaagttgaattataa---aatttgttttgattgagattaaaatta 146  Q
    |||||||| ||||||||| ||||||||||| ||||||||||   |||||||||||||||||||||||||||    
T  11668873 attgtttttaactctttaaatatttagaagatgaattataagaaaatttgttttgattgagattaaaatta 11668803  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 11668511 - 11668446
Alignment:
Q  79 attgttttgaactctttagatatttagaagttgaattat---aaaatttgttttgattgagattaa 141  Q
    |||||||| ||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  11668511 attgtttttaactctttagatatttaaaagttgaattataggaaaatttgttttgattgagattaa 11668446  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 8648946 - 8648888
Alignment:
Q  79 attgttttgaactctttagatatttagaagttgaattat---aaaatttgttttgattg 134  Q
    |||||||| ||||||||||||| ||||||||||||||||   |||||||||||||||||    
T  8648946 attgttttaaactctttagataattagaagttgaattataggaaaatttgttttgattg 8648888  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 15090393 - 15090451
Alignment:
Q  90 ctctttagatatttagaagttgaattata---aaatttgttttgattgagattaaaatt 145  Q
    ||||||||||||||||||||| || ||||   |||||||||||||||| ||||||||||    
T  15090393 ctctttagatatttagaagttaaaatatagaaaaatttgttttgattgggattaaaatt 15090451  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 10731440 - 10731510
Alignment:
Q  79 attgttttgaactctttagatatttagaagttgaattat---aaaatttgttttgattgagattaaaatta 146  Q
    |||||||| ||||||||||||||||||||||||||||||   ||||||||||||||||| |||||| ||||    
T  10731440 attgtttttaactctttagatatttagaagttgaattataggaaaatttgttttgattgggattaagatta 10731510  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 16364792 - 16364750
Alignment:
Q  79 attgttttgaactctttagatatttagaagttgaattataaaa 121  Q
    |||||||| |||||||||  |||||||||||||||||||||||    
T  16364792 attgtttttaactctttaactatttagaagttgaattataaaa 16364750  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 18194492 - 18194553
Alignment:
Q  83 ttttgaactctttagatatttagaagttgaattat---aaaatttgttttgattgagattaa 141  Q
    |||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  18194492 tttttaactctttagatatttagaagttgaattatatgaaaatttgttttgattgagattaa 18194553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 47257216 - 47257282
Alignment:
Q  83 ttttgaactctttagatatttagaagttgaattat---aaaatttgttttgattgagattaaaatta 146  Q
    |||| ||||||||||||||||||||||||||||||   ||||||||| || ||||||||||| ||||    
T  47257216 tttttaactctttagatatttagaagttgaattatcgaaaaatttgtattcattgagattaagatta 47257282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 2063652 - 2063580
Alignment:
Q  77 agattgttttgaactctttagatatttagaagttgaattat---aaaatttgttttgattgagattaaaatta 146  Q
    |||||||||| || |||||| ||||||||||||  ||||||   ||||||||||||||||  |||||||||||    
T  2063652 agattgtttttaaatctttacatatttagaagtgaaattatagaaaaatttgttttgattaggattaaaatta 2063580  T

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