View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20750_low_8 (Length: 251)

Name: NF20750_low_8
Description: NF20750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20750_low_8
NF20750_low_8
[»] chr4 (1 HSPs)
chr4 (24-251)||(37715247-37715481)
[»] chr1 (3 HSPs)
chr1 (127-251)||(8265612-8265736)
chr1 (24-80)||(43591133-43591189)
chr1 (44-82)||(8265497-8265535)
[»] chr3 (2 HSPs)
chr3 (24-80)||(35765011-35765067)
chr3 (24-80)||(46764176-46764232)
[»] chr2 (1 HSPs)
chr2 (24-80)||(21272009-21272065)
[»] chr7 (2 HSPs)
chr7 (156-242)||(39051318-39051406)
chr7 (47-85)||(18068727-18068765)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 37715247 - 37715481
Alignment:
Q  24 caggatcccgagtcagccgtttcaaacttttgaactttaattatcaattgaaataatatcatnnnnnnnnnttatatacc---aactcaattgtata--- 117  Q
    ||||||||||||| ||| | || |||||||||||||||||||||||||||||||||||||||          ||||||     ||||||||||||||       
T  37715247 caggatcccgagtaagcgggtttaaacttttgaactttaattatcaattgaaataatatcataaaaaaaatatatatatactaaactcaattgtatatat 37715346  T
Q  118 -tatactttgcaattgtcatttacccaattacatgttccgaaatcgttgaacaatcaacttattatcaatattgtctaacatgtctctcaatataatgca 216  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37715347 atatactttgcaattgtcatttacccaattacatgttctgaaatcgttgaacaatcaacttattatcaatattgtctaacatgtctctcaatataatgca 37715446  T
Q  217 caagataatcattcgtctattcatcttcatttgat 251  Q
    |||||||||||||||||||||||||||||||||||    
T  37715447 caagataatcattcgtctattcatcttcatttgat 37715481  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 127 - 251
Target Start/End: Original strand, 8265612 - 8265736
Alignment:
Q  127 caattgtcatttacccaattacatgttccgaaatcgttgaacaatcaacttattatcaatattgtctaacatgtctctcaatataatgcacaagataatc 226  Q
    |||||||||||||||   |||||||||| ||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||  ||||||| ||||    
T  8265612 caattgtcatttaccattttacatgttctgaaattgttgaacaatcaacctattatcaatattgtctaatatgtctctcaatataagtcacaagacaatc 8265711  T
Q  227 attcgtctattcatcttcatttgat 251  Q
    |||| |  |||||||||||||||||    
T  8265712 attcattcattcatcttcatttgat 8265736  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 43591189 - 43591133
Alignment:
Q  24 caggatcccgagtcagccgtttcaaacttttgaactttaattatcaattgaaataat 80  Q
    ||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  43591189 caggaccccgaatcagcgggttcaaacttttgaactttaattatcaattgaaataat 43591133  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 8265497 - 8265535
Alignment:
Q  44 ttcaaacttttgaactttaattatcaattgaaataatat 82  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  8265497 ttcaaatttttgaactttaattatcaattgaaataatat 8265535  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 35765067 - 35765011
Alignment:
Q  24 caggatcccgagtcagccgtttcaaacttttgaactttaattatcaattgaaataat 80  Q
    ||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  35765067 caggaccccgagtcagcgggttcaaacttttgaactttaattatcaattgaaataat 35765011  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 46764232 - 46764176
Alignment:
Q  24 caggatcccgagtcagccgtttcaaacttttgaactttaattatcaattgaaataat 80  Q
    ||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  46764232 caggaccccgagtcagcgggttcaaacttttgaactttaattatcaattgaaataat 46764176  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 21272065 - 21272009
Alignment:
Q  24 caggatcccgagtcagccgtttcaaacttttgaactttaattatcaattgaaataat 80  Q
    ||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  21272065 caggaccccgagtcagcgggttcaaacttttgaactttaattatcaattgaaataat 21272009  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 39051318 - 39051406
Alignment:
Q  156 gaaatcgttgaacaatcaacttattatcaatattgtcta--acatgtctctcaatataatgcacaagataatcattcgtctattcatct 242  Q
    |||||||||||| |||||||| || |||||| |||||    |||| |||||||||||||  |||||||||||||||| || ||||||||    
T  39051318 gaaatcgttgaataatcaactcatcatcaatcttgtccgccacatctctctcaatataagtcacaagataatcattcatccattcatct 39051406  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 18068765 - 18068727
Alignment:
Q  47 aaacttttgaactttaattatcaattgaaataatatcat 85  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  18068765 aaacttttgaactttaattatcaattataataatatcat 18068727  T

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